Showing 560 open source projects for "jargs/gnu/cmdlineparser"

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  • 1
    OpenEMS™ is the multi platform Grid framework to seamlessly aggregate all your multi platform resources into a virtual super computer.
    Downloads: 0 This Week
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  • 2
    Urbigene contains SciFOAF and MyFOAFExplorer, two tools used to build a scientific FOAF network from NCBI pubmed and to browse it.
    Downloads: 0 This Week
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  • 3
    SENTENSA Knowledge Miner is a platform independent tool for searching any text. SENTENSA uses robust methods of indexing and searching text, leveraging on experience from more than 20 years of information retrieval.
    Downloads: 0 This Week
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  • 4
    In silico experiments. Express Taverna's workflows using XQuery. Integrates with Taverna, provides automated XQuery generation from SCUFL. A standard Taverna processor that runs XQuery. Easy XML transformations inside Taverna workflows.
    Downloads: 0 This Week
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  • 5
    CompuCell3D is a software framework for multimodel simulations of biocomplexity problems. It has been developed as an ongoing project for the Interdisciplinary Center for the Study of Biocomplexity at the university of Notre Dame.
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  • 6
    SeqTRACS is a Laboratory Information Management System for tracking, organizing, and accessing sequencing requests and ABI trace files produced by a centralized sequencing core facility. Trace files are tracked in a database and can be retrieved by users
    Downloads: 1 This Week
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  • 7
    Cellontro models and simulates cells, other biological entities, and biochemical networks. Specify your models using XML and Java, or SBML. Cellontro is now completely contained within the Xholon sourceforge project.
    Downloads: 0 This Week
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  • 8
    Tools for comparative sequence analysis. Includes FamilyRelations (GUI) and a C++ toolkit/Python wrapper for doing fixed-width-window analyses.
    Downloads: 0 This Week
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  • 9
    openSputnik is a robust distributed platform for massive scale precalculation of genetic and genomic data using contemporary bioinformatics methods. Annotated DNA, RNA and protein sequences are stored as binary objects in a variery of relational database
    Downloads: 1 This Week
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  • 10
    JChemPaint Applet and Swing Application
    The JChemPaint Applet and Swing Application are Java programs for drawing 2D chemical structures like those found in most chemistry textbooks. It is based on the Chemistry Development Kit (cdk.sf.net). Downloads, tracker, and source code repository can be found on https://jchempaint.github.io
    Downloads: 0 This Week
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  • 11
    A dialect of XUL implementing most of Mozilla XUL's Fourth Draft. XML User Interface Language (XUL) is a method for easily creating GUI applications. Lux XUL supports Python scripting via Jython 2.1.
    Downloads: 0 This Week
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  • 12
    Collection of unofficial Cytoscape resources
    Downloads: 0 This Week
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  • 13
    A Mass Spectrometer B and Y ion labeling software for proteomics researchers. Peptide sequences can be read from a library and b and y ions will be calculated and sequence can be manipulated by the user (chem. mod. or amino acid mod.)
    Downloads: 0 This Week
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  • 14
    MirkE is a platform-independent Java application using Hibernate, HSQLDB and Colt designed to facilitate common but tedious calculations on spectrophotometric and colormetric data for molecular and cellular biology assays.
    Downloads: 0 This Week
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  • 15
    Molevolve is a Java library for running a Genetic Algorithm to model the 3-dimensional structures of peptide chains from amino-acid sequences. Client code can specify its own peptide chain model, fitness functions and GA operations. Requires JDK 1.5.
    Downloads: 0 This Week
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  • 16
    PEBLS Evolutionary Biology Libraries (PEBLs) provides a framework to develop programs quickly and effectively in Java, C++, and C.
    Downloads: 0 This Week
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  • 17
    PSIMAP is the Protein Structural Interactome MAP, a map of all the domain level protein-protein interactions in the Protein Data Bank (PDB). PSIsoft is an archive of the software used to generate and analyse PSIMAP.
    Downloads: 0 This Week
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  • 18
    The Octet-CDK interoperability package.
    Downloads: 0 This Week
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  • 19
    eQTLexplorer is a database application for the visualization and integrated mining of genetical genomics experiments.
    Downloads: 0 This Week
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  • 20
    CSBI is a component based framework that allows for inter-component data sharing and access. GINY is an Open Source Graph Library.
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  • 21
    The ORIEL workbench is a data browsing interface for REST-based information retrieval services. Originally developed for Bioinformatics applications.
    Downloads: 0 This Week
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  • 22
    Winnow is a graphical application for importing and organising articles from PubMed. It gives access to abstracts, full text and allows references to be saved. It can also predict what a user will find interesting through adaptive filtering.
    Downloads: 0 This Week
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  • 23
    Thea, Tools for High-throughput Experiment Analysis, is an integrated information processing system dedicated to the annotation of data issued from classification systems with biological information coming from a knowledge base.
    Downloads: 4 This Week
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  • 24
    LineageEvolver is a simulation system for molecular evolution. Sequence evolution is simulated using modular processes such as substitutions, gene duplication/death, horizontal gene transfer, and more.
    Downloads: 0 This Week
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  • 25
    ESTminer is a Web application and database schema for interactive mining of expressed sequence tag (EST) contig and cluster data sets.
    Downloads: 0 This Week
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