Showing 792 open source projects for "java projects on linux"

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  • 1
    Musite
    Musite provides a bioinformatics tool for predicting both general and kinase-specific protein phosphorylation sites.
    Downloads: 1 This Week
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  • 2
    This project has moved to http://code.google.com/p/synthetic/
    Downloads: 0 This Week
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  • 3
    A Java application used in whole genome analysis to display SNPs in a genomic context. Supplementary data is downloaded from various public data sources on the fly and saved locally in a cache. Custom data can be added as supplementary tracks.
    Downloads: 0 This Week
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  • 4
    GEM is a computational method for identification of transcription factor modulators, using expression datasets. The method tests if the correlation between factor and target gene depends on the expression of the modulator.
    Downloads: 0 This Week
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  • 5
    OpenClinica is a web-based electronic data capture platform for clinical research. See http://www.OpenClinica.org/ for downloads, documentation, and mailing lists.
    Downloads: 0 This Week
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  • 6
    The purpose of this project is to develop ontology-based tools for the study of animal behavior (ethology). The goal is not to produce a general ontology or editor, but comparative methods and (behavior) data entry tools (ethontos and owlwatcher).
    Downloads: 0 This Week
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  • 7
    The development and curation of a range of XML-based tools for using Chemical Markup Language (CML), including XSD XML Schemas for validation, datatyping and constraining CML documents and XSLT Stylesheets for transforming, filtering and rendering.
    Downloads: 1 This Week
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  • 8
    A collection of tools for working with the comparative data analysis ontology including import/export facilities for common phylogenetic file formats, and also a triple-store framework.
    Downloads: 0 This Week
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  • 9
    URBAN – a Unified Rule-Based and Allosteric Network compiler and simulator for quantitative modelling in systems and synthetic biology
    Downloads: 0 This Week
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    Smart Business Texting that Generates Pipeline

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  • 10
    molecular simulation program for anisotropic particle shape and potential
    Downloads: 0 This Week
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  • 11
    A system based on the multiagent approach, to help the biologists with the manual annotation task on genome sequencing projects
    Downloads: 0 This Week
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  • 12
    PubCurator is a biomedical text mining platform and validation helper built on top of Eclipse RCP.
    Downloads: 0 This Week
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  • 13
    ArrayPlex integrates various forms of microarray data from diverse annotation and primary data sources. It provides a programmatic framework (API set) for collaborative development and deploys as easy to maintain client-server architecture.
    Downloads: 0 This Week
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  • 14
    CEGA
    CEGA is a highly extendable layout plugin for Cytoscape based on an Evolutionary Algorithm. In contrast to other layout algorithms, CEGA lets users decide which features are important for the visualization of their graphs.
    Downloads: 0 This Week
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  • 15
    h2:www is an easily extendable online interface for bioinformatical command-line tools, providing convenient project-oriented working facilities for multiple users.
    Downloads: 0 This Week
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  • 16
    Source code for the Chemical Informatics and Cyberinfrastructure Collaboratory project.
    Downloads: 0 This Week
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  • 17
    GAME stays for Generic Architecture based on Multiple Experts. Its main purpose is to make easy prototyping, test and release of prediction systems. Released by IASC group, university of Cagliari
    Downloads: 0 This Week
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  • 18
    Sage Bionetworks
    Opensource software projects for genetics and genomics from Sage Bionetworks.
    Downloads: 0 This Week
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  • 19
    D-finder is a bioinformatic search algorithm for the identification of D-sites in JNK interacting proteins. The algorithm is a combination of pattern matching and a hidden markov model (HMM) based on a training set of known JNK D-sites.
    Downloads: 0 This Week
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  • 20
    Moara is a biological text mining tool and consists of a Java library and some auxiliary MySQL databases for gene/protein training and extraction of mentions and its further normalization and disambiguation.
    Downloads: 0 This Week
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  • 21
    A wrapper that makes the UMLS MetaMap tool (http://mmtx.nlm.nih.gov/) available as an UIMA analysis engine.
    Downloads: 0 This Week
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  • 22
    Care4G is a web-based software, as forking of the most famous care2x, it will be a complete HIS for the II Millennium...
    Downloads: 0 This Week
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  • 23

    cy2reposition

    cy2reposition: Cytoscape 2 plugin for layout reuse

    CyReposition is an open source Cytoscape Plugin for the reuse of existing Cytoscape network layouts in new Cytoscape projects. This project migrated to github https://github.com/matthiaskoenig/cy2reposition
    Downloads: 0 This Week
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  • 24
    DimReduction project provide an open-source multiplatform (Java) graphical environment for bioinformatics problems that supports many feature selection algorithms, pattern recognition techniques, criterion functions and graphic visualization tools.
    Downloads: 0 This Week
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  • 25
    SnoopCGH is a java desktop application for visualising and exploring comparative genomic hybridization (CGH) data.
    Downloads: 0 This Week
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