Showing 802 open source projects for "java open source"

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  • 1
    EMBOSS Suite
    EMBOSS is a dynamic and comprehensive Open Source package for bioinformatics (DNA and protein sequence analysis, protein structure, phylogenetics, etc.). EMBOSS is written in C, also compatible with C++, and has a separate Java interface (Jemboss)
    Downloads: 0 This Week
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  • 2
    MOLGENIS can be used to generate databases for life science experiments (micrroarray, mass spectrometry, genomics) having a web user interface, csv exchange format, and programmatic interfaces (web services, rest, and r-project). See NatRevGen 8.
    Downloads: 0 This Week
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  • 3
    Trial Criteria Online Data Entry (trialCODE): a Java-based user interface that codifies eligibility requirements used to automate the screening of potential subjects to clinical trials. Used for caMATCH screening engine on BreastCancerTrials.org site.
    Downloads: 0 This Week
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  • 4
    Client tools for the FuncNet protein function analysis platform: http://funcnet.eu/
    Downloads: 0 This Week
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  • 5
    a Java library designed to manage genotype and clinical data underlying complex diseases
    Downloads: 0 This Week
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  • 6
    This project has moved to http://code.google.com/p/synthetic/
    Downloads: 0 This Week
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  • 7
    The development and curation of a range of XML-based tools for using Chemical Markup Language (CML), including XSD XML Schemas for validation, datatyping and constraining CML documents and XSLT Stylesheets for transforming, filtering and rendering.
    Downloads: 9 This Week
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  • 8
    A Java application used in whole genome analysis to display SNPs in a genomic context. Supplementary data is downloaded from various public data sources on the fly and saved locally in a cache. Custom data can be added as supplementary tracks.
    Downloads: 0 This Week
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  • 9
    Musite
    Musite provides a bioinformatics tool for predicting both general and kinase-specific protein phosphorylation sites.
    Downloads: 0 This Week
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  • 10
    The Edinburgh Pathway Editor (EPE) is a tool and framework that allows the drawing and manipulation of Biological Networks, such as signalling or matabolic pathways. The editor supports several notations including SBGN and Cytoscape notations.
    Downloads: 0 This Week
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  • 11
    OpenClinica is a web-based electronic data capture platform for clinical research. See http://www.OpenClinica.org/ for downloads, documentation, and mailing lists.
    Downloads: 0 This Week
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  • 12
    The purpose of this project is to develop ontology-based tools for the study of animal behavior (ethology). The goal is not to produce a general ontology or editor, but comparative methods and (behavior) data entry tools (ethontos and owlwatcher).
    Downloads: 0 This Week
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  • 13
    A collection of tools for working with the comparative data analysis ontology including import/export facilities for common phylogenetic file formats, and also a triple-store framework.
    Downloads: 0 This Week
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  • 14
    PowerTalk automatically speaks Microsoft PowerPoint presentations. For presenters who find speaking difficult, audiences containing people with visual impairments and fun educational uses. Uses synthesised computer speech provided with Windows
    Downloads: 10 This Week
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  • 15
    Memomics Forge is a meta-project for software that utilizes the Memomics Semantic Service. Memomics Semantic Service provides semantic data which can be embedded in applications via webservices.
    Downloads: 0 This Week
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  • 16
    URBAN – a Unified Rule-Based and Allosteric Network compiler and simulator for quantitative modelling in systems and synthetic biology
    Downloads: 0 This Week
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  • 17
    molecular simulation program for anisotropic particle shape and potential
    Downloads: 0 This Week
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  • 18
    This program serves to provide any useful information regarding a set of loci on the genome. For every genomic position provided, the Annotater will return any "known" information regarding that position.
    Downloads: 0 This Week
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  • 19
    PubCurator is a biomedical text mining platform and validation helper built on top of Eclipse RCP.
    Downloads: 0 This Week
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  • 20
    ArrayPlex integrates various forms of microarray data from diverse annotation and primary data sources. It provides a programmatic framework (API set) for collaborative development and deploys as easy to maintain client-server architecture.
    Downloads: 0 This Week
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  • 21
    CEGA
    CEGA is a highly extendable layout plugin for Cytoscape based on an Evolutionary Algorithm. In contrast to other layout algorithms, CEGA lets users decide which features are important for the visualization of their graphs.
    Downloads: 0 This Week
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  • 22
    The Molwind project aims at developing Open Source software to visualize relationships among molecular entities such as chemical structures on the basis of NASA WorldWind. Different levels of complexity get visible by zooming in areas of interest.
    Downloads: 0 This Week
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  • 23
    A system based on the multiagent approach, to help the biologists with the manual annotation task on genome sequencing projects
    Downloads: 0 This Week
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  • 24
    Source code for the Chemical Informatics and Cyberinfrastructure Collaboratory project.
    Downloads: 0 This Week
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  • 25
    h2:www is an easily extendable online interface for bioinformatical command-line tools, providing convenient project-oriented working facilities for multiple users.
    Downloads: 0 This Week
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