Showing 785 open source projects for "java security for linux"

View related business solutions
  • Our Free Plans just got better! | Auth0 Icon
    Our Free Plans just got better! | Auth0

    With up to 25k MAUs and unlimited Okta connections, our Free Plan lets you focus on what you do best—building great apps.

    You asked, we delivered! Auth0 is excited to expand our Free and Paid plans to include more options so you can focus on building, deploying, and scaling applications without having to worry about your security. Auth0 now, thank yourself later.
    Try free now
  • Award-Winning Medical Office Software Designed for Your Specialty Icon
    Award-Winning Medical Office Software Designed for Your Specialty

    Succeed and scale your practice with cloud-based, data-backed, AI-powered healthcare software.

    RXNT is an ambulatory healthcare technology pioneer that empowers medical practices and healthcare organizations to succeed and scale through innovative, data-backed, AI-powered software.
    Learn More
  • 1
    (AB)² Simulation

    (AB)² Simulation

    Simulation for Physics / Bilogics Systems

    Supports flow Simulation for Physics and Meso-Compartimental Simulations for Biological Systems. Uses a Container-Flow based System.
    Downloads: 0 This Week
    Last Update:
    See Project
  • 2

    iPiG

    Integrating PSMs into Genome browser visualisations

    iPiG targets the integration of peptide spectrum matches (PSMs) from mass spectrometry (MS) peptide identifications into genomic visualisations provided by genome browser such as the UCSC genome browser (http://genome.ucsc.edu/). iPiG takes PSMs from the MS standard format mzIdentML (*.mzid) or in text format and provides results in genome track formats (BED and GFF3 files), which can be easily imported into genome browsers. For more details about iPiG and it's functionallity, please...
    Downloads: 0 This Week
    Last Update:
    See Project
  • 3
    An integrated bioinformatics toolkit for analysis of ChIPseq data from the Illumina DNA sequencing platform. Includes filtering, quality control, simulation, peakfinding, visualization, and comparison of samples.
    Downloads: 0 This Week
    Last Update:
    See Project
  • 4
    EvoPromoter is a JAVA application that detects promoter regions in aligned nucleotide sequences using phylogenetic hidden markov models.
    Downloads: 1 This Week
    Last Update:
    See Project
  • Premier Construction Software Icon
    Premier Construction Software

    Premier is a global leader in financial construction ERP software.

    Rated #1 Construction Accounting Software by Forbes Advisor in 2022 & 2023. Our modern SAAS solution is designed to meet the needs of General Contractors, Developers/Owners, Homebuilders & Specialty Contractors.
    Learn More
  • 5
    CellML-IDE
    An IDE for CellML 1.1 user models developed in UNSW as an open source project. Author: Mitchell Lanesbury 2012
    Downloads: 0 This Week
    Last Update:
    See Project
  • 6

    Linking Yabi with RDA

    This software system enables publication of YABI workflows to the RDA.

    Modern life science research requires bringing together Biology and Information technology. To help make this process easier, the CCG has developed YABI, an Internet based workflow application that is aimed at biologists who wish to conduct bioinformatics analysis. YABI integrates bioinformatics tools and data via an intuitive workflow creation and management environment. YABI can be used to access the NCI-SF in Bioinformatics and the tools available through the Embl Australia EBI mirror...
    Downloads: 0 This Week
    Last Update:
    See Project
  • 7
    CallSim

    CallSim

    low-volume read processing base corrector

    CallSim is a software application that provides evidence for the validity of base calls believed to be sequencing errors and it is applicable to Ion Torrent and 454 data. CallSim provides a final classification or rescue of a base/indel in reads, where putative variants have been identified via typical SNP/indel workflows. plots rendered by: JFreeChart library http://sourceforge.net/projects/jfreechart/
    Downloads: 0 This Week
    Last Update:
    See Project
  • 8

    samsn

    A tool to handle multi-stage mass spectrometry data

    The source code for SAMSN can be found in github at https://github.com/miquelrojascherto/samsn
    Downloads: 0 This Week
    Last Update:
    See Project
  • 9
    Blast2SNP
    The Blast2SNP is able to pick out synonymous, non-synonymous mutations and indels from draft assembly sequences by performing BLAST search against the reference ORF sequences.
    Downloads: 0 This Week
    Last Update:
    See Project
  • Pest Control Management Software Icon
    Pest Control Management Software

    Pocomos is a cloud-based field service solution that caters to businesses

    Built for the pest control industry, but also works great for Mosquito Control, Bin Cleaning, Window Washing, Solar Panel Cleaning, and other Home Service Businesses in need of an easy-to-use software that helps you simplify routing, scheduling, communications, payment processing, truck tracking, time tracking, and reporting.
    Learn More
  • 10

    Linking BPA with RDA

    This software system enables publication of ISA-Tab files to RDA.

    BioPlatforms Australia (BPA) has funded a number of datasets generation initiatives around important research themes and scientific challenges faced by Australian researchers to provide a unique public resource for the benefit of Australian life sciences research. These large scale genomic, proteomic and metabolomic datasets are being generated and centrally managed by Bioplatforms Australia in collaboration with leading scientists, research institutes and government agencies. With the...
    Downloads: 0 This Week
    Last Update:
    See Project
  • 11
    TRMSim-WSN
    TRMSim-WSN (Trust and Reputation Models Simulator for Wireless Sensor Networks) is a Java-based simulator aimed to test Trust and Reputation models for WSNs. It provides several Trust and Reputation models and new ones can be easily added.
    Leader badge
    Downloads: 0 This Week
    Last Update:
    See Project
  • 12
    Pontos

    Pontos

    Pontos calculates distance matrices from DNA sequence alignments.

    ...R would be 0.5 different from A or G); - ignore ambiguities in each pairwise comparison; - remove all columns, globally, that show any ambiguity. Pontos was written in Linux, but should run in any system where Java works. Pontos is licensed under the GPL version 3.
    Downloads: 0 This Week
    Last Update:
    See Project
  • 13

    mPSQed

    Alignment editor and multiplex pyrosequencing assay designer

    Molecular-based diagnostic assays are the gold standard for infectious diseases today, since they allow a rapid and sensitive identification and typing of various pathogens. While PCR can be designed to be specific for a certain pathogen, a subsequent sequence analysis is frequently required for confirmation or typing. The design of appropriate PCR-based assays is a complex task, especially when conserved discriminating polymorphisms are rare or if the number of types which need to be...
    Downloads: 0 This Week
    Last Update:
    See Project
  • 14
    Evoker is a graphical tool for plotting genotype intensity data in order to assess quality of genotype calls. It implements a compact, binary format which allows rapid access to data, even with hundreds of thousands of observations. PLEASE NOTE: This source repository is no longer active. See the github link above for the latest version.
    Downloads: 0 This Week
    Last Update:
    See Project
  • 15
    rNA is an aligner for short reads produced by Next Generation Sequencers
    Downloads: 0 This Week
    Last Update:
    See Project
  • 16
    SemaRule Navigator
    SemaRule Navigator is an Integrated Suite of Open-Source and Free-License Software, placing Semantic and Text Analysis Technologies in the toolbox of Researchers, Students, and Enterprises.
    Downloads: 0 This Week
    Last Update:
    See Project
  • 17
    JFinisher

    JFinisher

    JFinisher is software for alignment, editing and manipulation DNA seqs

    JFinisher is software for alignment, editing and manipulation of biological sequences. It aims to assist in the finishing of genome assembly. Starting from a reference sequence, the program align contigs using Smith-Waterman local alignment algoritm with auxiliary methods, allowing management of the alignments generated. It has graphical interface for manipulation and visualization of the actions, uniting features that help in editing the sequences. It has internal projects manageable and...
    Downloads: 2 This Week
    Last Update:
    See Project
  • 18
    Index biological data (genbank sheets, Uniprot...) in a Solr indexer, with index shard support and provides a query interface. Project goal is to create a virtual image with indexer and web interface to query and visualize biological data.
    Downloads: 0 This Week
    Last Update:
    See Project
  • 19
    Lindenmayer ist ein Programm zur Visualisierung von L- bzw Lindenmayer-Systemen mittels hübscher Baumgrafiken. Die ausführbaren Dateien und Hinweise zum Quellcode finden Sie auf unserer Homepage unter http://lindenmayer.berlios.de/.
    Downloads: 0 This Week
    Last Update:
    See Project
  • 20
    Phenex
    Phenex is an application for annotating taxa and phenotypes in character matrix files with ontology terms. Phenex saves ontology annotations alongside traditional character matrix data using the NeXML format standard for evolutionary data. Current Phenex development is taking place at GitHub: https://github.com/phenoscape/Phenex
    Downloads: 0 This Week
    Last Update:
    See Project
  • 21
    auto-importer
    ATOM is an OMERO client which allows automated import of image data into OMERO. ATOM is provided as is without any guarantees or warranty. The author is not responsible for any damage or losses of any kind caused by the use or misuse of the programs.
    Downloads: 0 This Week
    Last Update:
    See Project
  • 22
    Downloads: 0 This Week
    Last Update:
    See Project
  • 23
    Screensaver is a Lab Information Management System (LIMS) for high-throughput screening of small molecule and RNAi biological assays. It is a Java/JSF/Hibernate/Spring web application that is actively being developed and used at Harvard Medical School. Note: The Screensaver project has moved to GitHub at https://github.com/hmsiccbl/screensaver.
    Downloads: 0 This Week
    Last Update:
    See Project
  • 24
    Add-on to Haploview that picks tagSNPs while allowing for: (1) preferential selection based on user-defined criteria, (2) selection across multiple populations, (3) selection outside defined genomic regions, and (4) picking of surrogate (backup) tagSNPs.
    Downloads: 0 This Week
    Last Update:
    See Project
  • 25
    A gibbs energy calculator based on the CDK.
    Downloads: 0 This Week
    Last Update:
    See Project