Fortran Bio-Informatics Software

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Browse free open source Fortran Bio-Informatics Software and projects below. Use the toggles on the left to filter open source Fortran Bio-Informatics Software by OS, license, language, programming language, and project status.

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  • 1
    Free DELTA

    Free DELTA

    Software tools for processing taxonomic descriptions in DELTA format

    The Free DELTA Project is a free, open-source, software alternative for a generic system to the processing of taxonomic descriptions based on the DELTA (DEscription Language for TAxonomy) format.
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    Downloads: 141 This Week
    Last Update:
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  • 2
    A fully developed set of DNA sequence assembly (Gap4 and Gap5), editing and analysis tools (Spin) for Unix, Linux, MacOSX and MS Windows.
    Downloads: 45 This Week
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  • 3
    Pysces

    Pysces

    PySCeS is the Python Simulator of Cellular Systems

    PySCeS is the Python Simulator of Cellular Systems. For a network of coupled reactions it does a stoichiometric matrix analysis, calculates the time course and steady state, and does a complete control analysis.
    Downloads: 2 This Week
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  • 4

    PSICOV

    The unofficial binary for PSICOV: Protein Sparse Inverse COVariance

    PSICOV (Protein Sparse Inverse Covariance estimation program) is a coevoultion algorithm applied to very large (typically >=1000 sequences) multiple sequence alignments for precise protein structural contact prediction. This is the unofficial precompiled Windows binary for PSICOV compiled by Chengxin Zhang at Fudan University. The source code is copyrighted by David T. Jones, University College London.
    Downloads: 7 This Week
    Last Update:
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  • 5
    Ascalaph Graphics
    Molecular Graphics and Dynamics. Molecular model builder. Part of the Ascalaph Designer http://sourceforge.net/projects/asc-designer/ project. Windows & Linux.
    Downloads: 2 This Week
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  • 6
    DBSolveOptimum

    DBSolveOptimum

    The software for systems biology/pharmacology modeling

    DBSolveOptimum is a stand-alone software tool for the construction and analysis of mathematical models of biological systems. It is a succession and extension of DBSolve 5 and DBSolve 7, which were popular tools for systems biology. In addition to the capabilities of these software packages, DBSolveOptimum is implemented with new tools for extended data analysis and multiple simulations, which are important for simulation of virtual clinical trials and application of modern modeling techniques, like quantitative systems pharmacology, to problems arising in drug research and development. By this time, DBSolveOptimum has been successfully tested and applied for the development and analysis of both systems pharmacology and conventional PK/PD models of drugs. It is free for academic and industrial use. http://www.ncbi.nlm.nih.gov/pubmed/20698988
    Downloads: 3 This Week
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  • 7

    SpectralWorks

    View, manipulate, analyze (LS fit, SVD, FT), and make figs of, spectra

    Program for viewing, editing, manipulating, and analyzing absorbance spectra. Simple arithnetic includes making linear combinatins of up to 10 spectra. Advanced functions include fitting spectra as LC of standard basis spectra, singular value decomposition, Fourier transform, differentiation, integration, global fitting of 3D titration and kinetic data. Graphics features allow composing Figures and export to postscript files which can be converted to pdf, imported into photoshop for rasterization, or used in page design software like Illustrator.
    Downloads: 2 This Week
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  • 8
    BMDExpress is a bioinformatics tool used to analyze microarray dose-response data. The analysis provides benchmark dose estimates at which different cellular processes are altered in toxicogenomic experiments.
    Downloads: 1 This Week
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  • 9
    ByoDyn (http://cbbl.imim.es/ByoDyn) is a software tool for the study of biochemical networks within the framework of systems biology. SBML compatible, ByoDyn is a group effort of the Computational Biochemistry and Biophysics Lab.
    Downloads: 1 This Week
    Last Update:
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  • 10
    RPowr is a simple calculator for planning correlational research. It computes the power of the Pearson correlation coefficient allowing adjustment for unreliability and range restriction of the variables (e.g. predictor and criterion measures).
    Downloads: 1 This Week
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  • 11
    APBS

    APBS

    Biomolecular electrostatics software

    This software has moved to http://www.poissonboltzmann.org/.
    Downloads: 0 This Week
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  • 12
    Avian Freeware Suite (AFS) provides two things: Developers with libraries for Java Swing Widgets, XML handling, Fortran95 and Pascal; End users (Medical students, doctors, scientists) with productivity tools they can use (quizzes, XML databasing & PDF)
    Downloads: 0 This Week
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  • 13
    The Canopy project is an initiative to merge and expand the functionality of Perl-speaks-NONMEM (PsN), Census, Xpose and PopED. The goal is to produce a coherent, inclusive and convenient platform for pharmacometric data analysis.
    Downloads: 0 This Week
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  • 14
    ConPath was primarily developed as an independent tool, coupled to other Quantum Chemical codes, in order to explore the hyper-surfaces of conically intersecting geometries (equivalently the Intersection Space).
    Downloads: 0 This Week
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  • 15
    Hy3S uses advanced MPI parallelized hybrid stochastic simulation methods to quickly compute the dynamics of biochemical networks with thousands of species/reactions. Many features included (see Home Page). An easy-to-use GUI (Matlab req) is included.
    Downloads: 0 This Week
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  • 16
    Computational prediction of isochores in genome sequences
    Downloads: 0 This Week
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  • 17
    A group of statistical tools used in the development and structuring of clinical trials by the American Cancer Society. Sample size calculators.
    Downloads: 0 This Week
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  • 18
    MDcons(Molecular Dynamics consensus)

    MDcons(Molecular Dynamics consensus)

    Interpretation of Biomolecular MD simulations

    MDcons is a tool to analyze conserved contacts during Molecular Dynamics (MD) simulations of Protein, Rna, Dna & Ligand based complexes. The input is either a Molecular Dynamics trajectory or a set of snapshots. The input can also be a single snapshot. The outputs are (1) map of most/less frequently conserved contacts during MD (2) a list of most/less frequently conserved contacts during MD.
    Downloads: 0 This Week
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  • 19
    Mendel’s Accountant
    Mendel’s Accountant is a biologically realistic, forward-time, parallel, numerical simulation program which models genetic change within a population, as affected by mutation and selection.
    Downloads: 0 This Week
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  • 20
    PEBLS Evolutionary Biology Libraries (PEBLs) provides a framework to develop programs quickly and effectively in Java, C++, and C.
    Downloads: 0 This Week
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  • 21
    **** This page is not used for this project any longer. *** Please update your bookmarks and go to https://github.com/UUPharmacometrics/PsN
    Downloads: 0 This Week
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  • 22
    ProgPorts is an administrative and easy user interface to hundreds of proteomics, molecular dynamics, and protein crystallography programs. It is a hybrid of the prog/setup system, developed at Johns Hopkins University, and GNU-Darwin ports system.
    Downloads: 0 This Week
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  • 23
    Tools and programs I have written for various purposes and those used in it.
    Downloads: 0 This Week
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  • 24
    This site hosts the source code for C++ version of the Broker for SBW, NOM module, advanced simulation suite, analysis applications and model editors.
    Downloads: 0 This Week
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  • 25

    Virtual Cell

    Former home of the Virtual Cell platform (VCell), see http://vcell.org

    This project and all source code has moved to GitHub, see https://github.com/virtualcell
    Downloads: 0 This Week
    Last Update:
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