A JAVA GUI for performing the function of Tophat and Cuffdiff
...This program will save the output into separate folders.
An alert email will be sent to your email address when the job is done. (You will need to modify the source code to change the content to meet your special needs)
Run-time information will be displayed in a JAVA output window.
The JChemPaint Applet and Swing Application are Java programs for drawing 2D chemical structures like those found in most chemistry textbooks. It is based on the Chemistry Development Kit (cdk.sf.net). Downloads, tracker, and source code repository can be found on https://jchempaint.github.io