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The PUMA Repository is a collection of Pascal units for medical informatics. It contains reusable sourcecode for a wide field of health-care application development. The code includes a support engine for the European Data Format (EDF and EDF+), converting functions for units of measurement and an HL7 engine.
PUMA is compatible with Lazarus and Free Pascal. Some of the units also support other Pascal implementations including Delphi, winsoft Pocket Studio and other compilers.
TI2BioP allows mainly the calculation of topological indices (spectral moments) derived from inferred and artificial 2D structures of DNA, RNA and proteins being possible to carry out a structure-function correlation irrespective of sequence alignments.
TI2BioP version 3.0 is a python platform with a graphical interface designed for Windows, Linux and Mac OS.
Patlac--Xml2cpp is a totally customizable code generator that generates classes (c++ for now) automatically from a xsd schema. Classes are described in google-ctemplate files and a xml options file allow precise definition of projects.
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A JAVA GUI for performing the function of Tophat and Cuffdiff
...You can now execute as many mapping jobs as you want with tophat. This program will save the output into separate folders.
An alert email will be sent to your email address when the job is done. (You will need to modify the sourcecode to change the content to meet your special needs)
Run-time information will be displayed in a JAVA output window.
The JChemPaint Applet and Swing Application are Java programs for drawing 2D chemical structures like those found in most chemistry textbooks. It is based on the Chemistry Development Kit (cdk.sf.net). Downloads, tracker, and sourcecode repository can be found on https://jchempaint.github.io
The Molecular Modeling Templates, MMT is a C++ class library for molecular simulation applications. MMT serves as a code basis that can be easily extended and modified to perform Monte Carlo and molecular dynamics simulations.