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Patlac--Xml2cpp is a totally customizable code generator that generates classes (c++ for now) automatically from a xsd schema. Classes are described in google-ctemplate files and a xml options file allow precise definition of projects.
A JAVA GUI for performing the function of Tophat and Cuffdiff
...You can now execute as many mapping jobs as you want with tophat. This program will save the output into separate folders.
An alert email will be sent to your email address when the job is done. (You will need to modify the sourcecode to change the content to meet your special needs)
Run-time information will be displayed in a JAVA output window.