2 programs for "input file" with 2 filters applied:

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  • 1

    JSiteDescriptor

    Binding site descriptor generation for SVM based classification.

    A set of java programs that extract coordinate and chemical information from PDB files. The binding site regions are extracted using grid based scheme. For binding site, spatio-chemical descriptor is generated based on PocketMatch algorithm of Dr. Kalidas (author of this project too).
    Downloads: 0 This Week
    Last Update:
    See Project
  • 2
    Javamony

    Javamony

    A Student's Approach to the Phylogenetic Problem

    ... fundamental problems in phylogenetics. Therefore, for my own educational benefit, all code is original. Of course, there are probably a good deal of mistakes as well. I distribute Javamony, as I did Pysimony, hoping that it will be of educational value to someone else or at least vaguely amusing. Upcoming features will be: - Support for Amino Acid sequences - Support for additional file formats (e.g. Nexus) - Multithreading - Additional scoring methods (e.g. maximum likelihood)
    Downloads: 0 This Week
    Last Update:
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