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Showing 6 open source projects for "sequence scaffold, java"

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  • 1

    NGSpop

    NGSpop: identifying & visualizing sequence variation in deepvariant

    *NOTICE* The official software(NGSpop) will be updated soon, so please visit us in 2/29. Thank you.
    Downloads: 0 This Week
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  • 2

    x2fasta

    Tools for reformatting common sequence formats into fasta

    A collection of tools to transform common biosequence formats (e.g. EMBL, SWISS-PROT, UniProtKB, GenBank and RefSeq) into the fasta sequence format.
    Downloads: 0 This Week
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  • 3
    PlaTypUS

    PlaTypUS

    Plasmodium Typing Utility Software

    The goal of PlaTypUS is to establish a unified Plasmodium whole genome analysis tool, that aligns short read sequences in an agreed upon manner, with many quality control steps, and calls both SNVs and CNVs in a community agreed standard way. We also seek to provide this analysis in a stand-alone graphic user interface so that labs around the world can analyze their own whole genome sequencing data, rather than relying on outside institutes.
    1 Review
    Downloads: 0 This Week
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  • 4
    A set of software utilities for processing and analyzing 16S rRNA genes including generating NAST alignments, chimera checking, and assembling paired 16S rRNA reads according to reference sequence homology.
    Downloads: 0 This Week
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  • 5
    EMBOSS Suite
    EMBOSS is a dynamic and comprehensive Open Source package for bioinformatics (DNA and protein sequence analysis, protein structure, phylogenetics, etc.). EMBOSS is written in C, also compatible with C++, and has a separate Java interface (Jemboss)
    1 Review
    Downloads: 0 This Week
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  • 6
    Tools for comparative sequence analysis. Includes FamilyRelations (GUI) and a C++ toolkit/Python wrapper for doing fixed-width-window analyses.
    Downloads: 0 This Week
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