This space is not maintained anymore. If you want to get the latest updates on fpocket refer to https://github.com/Discngine/fpocket.
Fpocket is a very fast open source protein pocket detection algorithm based on Voronoi tessellation. The platform is suited for the scientific community willing to develop new scoring functions and extract pocket descriptors on a large scale level.
OpenCV powered image stack analyser for data extraction and preparation.
Can be used in conjunction with nanocalcFX.
You can get sample data at the NISA homepage.
Currently in pre-alpha state.
This project is not active any more since we failed to get the permit from the Clustal team to distribute our software. You can refer to the paper "Yongchao Liu, Bertil Schmidt, Douglas L Maskell:MSA-CUDA: multiple sequence alignment on graphics processing units with CUDA. ASAP 2009" for more details.
NGS can product a pair of reads which come from one original DNA fragment. If the internal gap can be correctly filled, we will get the full length sequence of original DNA fragment.
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..., for "Hordes of Little Atoms," is a project to develop a lean,
modular, scalable toolkit for massive simulations of particle
(molecular) dynamics. It is written in C and Python to get the best
balance between programmer and run time.