Showing 7 open source projects for "Databases Open Source & DevTools"

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  • 1
    Comet MS/MS search engine

    Comet MS/MS search engine

    Comet open source tandem mass spectrometry (MS/MS) search engine.

    September 2021: the code repository has migrate to https://github.com/UWPR/Comet Comet is an open source tandem mass spectrometry (MS/MS) sequence database search engine. It identifies peptides by searching MS/MS spectra against sequences present in protein sequence databases. Comet currently exists as a simple Windows or Linux command line binary that only does MS/MS database search. Supported input formats are mzXML, mzML, ms2, and Thermo RAW files. ...
    Downloads: 2 This Week
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  • 2
    Tagger is a tool which allows searching fixed-sequence tags (or sequence branches) against entire genomes or mRNA reference sequence databases.
    Downloads: 0 This Week
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  • 3

    Multiple Alignment Manipulator

    MaM processes and manipulates multiple sequence alignments.

    MaM is a software tool that processes and manipulates multiple alignments of genomic sequences. MaM computes the exact locations of common repeat elements in multiple aligned sequences, provided by a variety of user identified programs databases and tables. It then graphically displays how the alignment quality varies throughout the aligned sequences, providing separate displays for the repeat and non-repeat portions.
    Downloads: 0 This Week
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  • 4
    Biodiversity Information Group develops software tools and data standards that enable herbaria and museums to create dynamic distributed queries of their online databases. See http://bit.ly/bfirSh and http://bit.ly/bwpnSY for latest developments.
    Downloads: 0 This Week
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  • 5
    NoBlast provides a new extended user friendly csv output format and offers an option to correct the statistics when split databases are used for NCBI BLAST programs (Blastn, Blastp, Blastx, Tblastn and Tblastx).
    Downloads: 0 This Week
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  • 6
    ProteinFinder - a C language parallel computing engine for tandem protein mass spectrometry database search. ProteinFinder is interfaced with MySQL relational database MassSpec that hosts the experimental data, predicted databases, and search results.
    Downloads: 0 This Week
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  • 7
    DEODAS designs & analyzes consensus-degenerate oligonucleotide probes for biological research. DEODAS automatically designs and screens, probes against databases of known genes & stores the information in a searchable database.
    Downloads: 0 This Week
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