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    YeastpRofile

    YeastpRofile

    Software to calculate profiles around TSS and TTS of yeast mRNAs

    ...The data of TSS and TTS counts used to compute the profiles were taken from the work of Pelechano et al. (1). The input file must be a BedGraph formatted file based on yeast genome sequence release R64. The output file is a text tab-delimited table reporting R values for the various shifts of variable coordinates with respect to TSS or TTS. R related to each strand is also reported to verify that a similar profile is obtained in the two direction of transcription. 1) V. Pelechano, W. Wei, L.M. Steinmetz, Extensive transcriptional heterogeneity revealed by isoform profiling, Nature, 497 (2013) 127-13.
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    BigBang/Horizon is a proteomics data analysis pipeline with focus on the shotgun LC/MSMS workflow.
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  • 3
    IPGPhor 2 Reader parses log (text) files resulting from an experiment with the IPGPhor (isoelectrofocusing of proteins on IPG strips) and plots graphs.
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