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Genomic Region Archiving and Binding Sites Analysis (BiSA)
...Analysis results can be restricted to a chromosome; the minimum base pair overlap in two sets or maximum distance between regions can be set; as can the maximum allowed distance between region centres. BiSA is capable of reporting overlapping regions that share common base pairs; regions that are nearby; regions that are not overlapping; average region sizes. BiSA can also annotate binding regions of interest with nearby genes. The results of overlap analysis can be imported into the Knowledge Base, allowing them to go into downstream analysis and independent annotation. A Venn diagram tool is also integrated into the software to allow users to visualize overlap results.
FacScan is a predicting tool of transcription factor binding sites.
FacScan scans multiple DNA sequences, e.g. from microarray
experiments, for potential binding sites of regulatory transcription factors.
Common sites shared by the genes will also b