Showing 2 open source projects for "threads"

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    MPI-dot2dot

    A Parallel Tool to Find DNA Tandem Repeats on Multicore Clusters

    MPI-dot2dot is a parallel tool to accelerate the identification of Tandem Repeats on multisequence datasetes. This tool receives as input a multisequence file with FASTQ or FASTA formats. It uses MPI processes and OpenMP threads to exploit the compute capabilities of multicore clusters.
    Downloads: 0 This Week
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    CUSHAW2: Parallel Gapped Read Alignment

    One of the leading short-/long-read aligner to large genomes

    ...The performance evaluation, by aligning simulated and real datasets to the human genome, shows that CUSHAW2 is consistently among the highest-ranked aligners in terms of alignment quality for both single-end and paired-end alignment, while demonstrating highly competitive speed. Furthermore, our aligner shows good parallel scalability with respect to the number of CPU threads.
    Downloads: 1 This Week
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