Showing 10 open source projects for "classification"

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  • 1
    PyTom

    PyTom

    http://www.sciencedirect.com/science/article/pii/S1047847711003492

    PyTom is a toolbox developed for interpreting cryo electron tomography data. All steps from reconstruction, localization, alignment and classification are covered with standard and improved methods. Please sign up to our mailing list to keep up with the most recent updates and versions.
    Downloads: 0 This Week
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  • 2

    MetaDomain

    Protein domain classification for short sequences

    MetaDomain is a protein domain classification tool designed for very short next-generation sequencing reads. It achieves better sensitivity and low false positive rate compared with the state-of-the-art profile hidden Markov model (profile HMM) alignment tool in identifying encoded domains from short sequences.
    Downloads: 0 This Week
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  • 3
    ...Rho et al., "De novo identification of LTR retrotransposons in eukaryotic genomes", BMC Genomics (2007) 8:90. 2. M. Rho and H. Tang, "MGEScan-non-LTR: computational identification and classification of autonomous non-LTR retrotransposons in eukaryotic genomes", Nucleic Acids Research (2009) 37:21.
    Downloads: 0 This Week
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  • 4

    multipsq

    Analysis of pyrograms form multiplex pyrosequencing experiments

    ...These primers generate a fingerprint-pyrogram which is constituted by the sum of all individual pyrograms originating from each primer used. MultiPSQ allows the analysis and classification of multiplex-pyrograms originating from various pyrosequencing primers.
    Downloads: 0 This Week
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  • 5
    ParsInsert
    ParsInsert efficiently produces both a phylogenetic tree and taxonomic classification for sequences for microbial community sequence analysis. This is a C++ implementation of the Parsimonious Insertion algorithm.
    Downloads: 2 This Week
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  • 6
    BCAR is a library for the associative classification, which denotes "Boosting Class Association Rules". BCAR provides a general tool for classification tasks with various types of input data.
    Downloads: 0 This Week
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  • 7
    satDNA Analyzer is a tool devoted to the classification of Strachan Transition States in samples of satellite DNA. It performs several computations, including nucleotide diversity and transitions/transversions. It shows results graphically in html format.
    Downloads: 0 This Week
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  • 8
    The program NAcMoS (Nucleic Acid Modeling System) is a software package that leads to a natural classification of RNAs represented as weighted graphs.
    Downloads: 0 This Week
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  • 9
    Taxabase is being developed as an open source, cross-platform application for the organisation, classification, retrieval and identification of biological taxa. Devel on "Rachis" aka taxabase3 is now beginning. Rachis is being implemented from scratch.
    Downloads: 0 This Week
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  • 10
    The phase machine program allows supervised classification of DNA sequence data from different populations using haplotype sequences generated by the PHASE program.
    Downloads: 0 This Week
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