Search Results for "data4.bin"
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5 projects for "data4.bin" with 2 filters applied:
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miRStat
identification of common sets of microRNAs for groups of genes
...This Python application is based on the TargetScan 6.2 microRNA target prediction data. Conserved and Nonconserved site context+ scores files are required (unzip and place to directory with program). Available at http://targetscan.org/cgi-bin/targetscan/data_download.cgi?db=vert_61 -
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GenNon-h
Simulating non-homogeneous multiple sequence alignments
...Based on the input model and a phylogenetic tree in the Newick format (with branch lengths measured as the expected number of substitutions per site), the algorithm produces DNA alignments of desired length. GenNon-H is a collaborative project described at http://genome.crg.es/cgi-bin/phylo_mod_sel/AlgGenNonH.pl. -
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T-lex
Transposable Element annotation using Next-Generation Sequencing data
...On top of the genotyping, this pipeline also allows to re-annotate TEs and discover traces of transposition events called Target Site Duplication (TSD). The other T-lex pipeline discovers and annotates de novo TE insertions. http://petrov.stanford.edu/cgi-bin/Tlex.html -
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This library is a lightweight implementation of genetic algorithm, contains the most popular types of chromosomes and the basic algorithms for selection, elitism, crossing and mutation.
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Software package for biological sequence analysis and better organization of the sequence data. Uses a modified version of alistat from Sean Eddy's group Squid package (http://selab.wustl.edu/cgi-bin/selab.pl?mode=software)
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