191 projects for "python" with 2 filters applied:

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  • 1
    BioMa is a specimen based Biodiversity database Manager. It is designed to store, organize, and manipulate biodiversity-related scientific data, either for the purposes of museums, scientific collections, or research projects.
    Downloads: 0 This Week
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  • 2
    Cleaver is a program for comparing restriction endonuclease digests of orthologous DNA sequences from different taxa. It performs virtual restriction digests and searches for endonucleases that cleave DNA fragments from given taxa but not others.
    Downloads: 0 This Week
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  • 3
    RStatServer is a system for quickly developing and deploying web applications that integrate statistical computations and graphics. It is built using the Zope web application develeopment system and the open-source statistical data analysis environment R
    Downloads: 0 This Week
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  • 4
    A project to develop an integrated and open bioinformatics framework and environment.
    Downloads: 0 This Week
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  • 5
    Tools for comparative sequence analysis. Includes FamilyRelations (GUI) and a C++ toolkit/Python wrapper for doing fixed-width-window analyses.
    Downloads: 0 This Week
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  • 6
    openSputnik is a robust distributed platform for massive scale precalculation of genetic and genomic data using contemporary bioinformatics methods. Annotated DNA, RNA and protein sequences are stored as binary objects in a variery of relational database
    Downloads: 0 This Week
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  • 7
    DNAID software is a tool for assessing confidence in biological identifications made by comparing DNA sequences. It allows DNA sequences to be placed within a taxonomy and determines confidence in matches of a query sequence to each taxon.
    Downloads: 0 This Week
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  • 8
    A dialect of XUL implementing most of Mozilla XUL's Fourth Draft. XML User Interface Language (XUL) is a method for easily creating GUI applications. Lux XUL supports Python scripting via Jython 2.1.
    Downloads: 0 This Week
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  • 9
    Disease Gene Profiler (DGP) comprises of a set of (bioinformatics) tools that can be used to identify the genes underlying susceptibility to common multifactorial diseases (such as diabetes, asthma and cancer) using freely available datasources.
    Downloads: 0 This Week
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  • 10
    ArrayOligoSelector (AOS) systematically designs gene specific long oligo probes for entire genomes. The program optimizes the oligo selections for several parameters, including uniqueness in the genome, internal repeats, self-binding, and GC content.
    Downloads: 1 This Week
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  • 11
    A Java software for 3D visualization of graphs/networks. It implements many graph layout algorithms (such as force-directed methods), graph generators (such as scale-free networks) and graph modifiers. Most functions can be accessed through its GUI.
    Downloads: 0 This Week
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  • 12
    defunct
    Downloads: 0 This Week
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  • 13
    Rana, Restriction Analysis Libraries. Rana is written in Python and provides a set of libraries and scripts to work with restriction enzymes and ADN. The aim is to ease the development of molecular biology software for research or education purposes.
    Downloads: 0 This Week
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  • 14
    A Python interface to the Wordnet database of word meanings and lexical relationships. allows the user to type expressions such as N['dog'], hyponyms(N['dog'][0]), and closure(ADJ['red'], SYNONYM) to query the database for lexical relationships.
    Downloads: 3 This Week
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  • 15
    defunct
    Downloads: 0 This Week
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  • 16
    Pymerase is a tool intended to generate a python object model, relational database, and an object-relational model connecting the two. However it has been extended to also output webpages and can be easily extended to output whatever else you might like.
    Downloads: 0 This Week
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  • 17
    SureFit generates 3D mesh surfaces (in VTK and Caret formats) from 3D structural MRI volumes (in formats such as Analyze, AFNI, raw).
    Downloads: 0 This Week
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  • 18
    Frowns is a chemoinformatics system written almost entirely in python.
    Downloads: 0 This Week
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  • 19
    NeuroPython is a Python module created for easy simulation of neural networks.
    Downloads: 0 This Week
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  • 20
    The Comparative Toxicogenomics Database (under development) will be a publicly-available, web-based database of genes and proteins of human toxicological significance. It is being developed using an Oracle 9i database, Tomcat, and Python.
    Downloads: 0 This Week
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  • 21
    Zherlock has now changed name to SciCraft and no longer hosted on sourceforge. Visit our new site at http://www.scicraft.org
    Downloads: 0 This Week
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  • 22
    Network Visualization is a mature part of computer science that is enjoying a good deal of growth, partially fueled by Bioinformatics. Network is a synonym for Graph, and both refer to a collection of nodes and edges.
    Downloads: 0 This Week
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  • 23
    The purpose of this project is to make available a variety of tools written in Python.
    Downloads: 0 This Week
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  • 24
    Galileo is a library for developing custom distributed genetic algorithms developed in Python. It provides a robust set of objects that can be used directly or as the basis of derived objects. Its modularity makes it easy to extend the functionality. The
    Downloads: 0 This Week
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  • 25
    ABE is a small, fast and convenient program for visualizing and modeling experimental bioassay data. The data can be modeled using either polynomials or a more specific four-parameter model based upon the standard, sigmoidal dose-response curve.
    Downloads: 0 This Week
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