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SimThyr is a continuous simulation program for the human pituitary-thyroid feedback control system. Applications of this program cover research, including development of hypotheses, and education of students in biology and medicine, nurses and patients.
Even in the simplified two dimensional HP-model (hydrophob/polar) the prediction of proteinfolding is NP complete. We implement a brute force algorithm with serial and parallel execution to solve short inputs of HP sequences (0-1 bitstrings).
Selbst im vereinfachten zweidimensionalen HP-Modell (hydrophob/polar) ist die Proteinfaltung bereits NP-vollständig. Hier implementieren wir einen brute-force Algorithmus zur Lösung kurzer Eingabesequenzen (0-1-Bitstrings) für die...
SPA: a short peptide assembler for metagenomic data
...Youngik Yang, Cuncong Zhong, and Shibu Yooseph*
J. Craig Venter Institute, San Diego, CA
{yyang,czhong,syooseph}@jcvi.org
* Corresponding author
SPA is available in binary on 64 bit Linux OS.
SFA-SPA is available in binary and source for 64 bit Linux OS.
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The Portable Cray Bioinformatics Library is a C implementation of the proprietary Cray Bioinformatics Library. It is designed to run on a wide variety of platforms in either 32- or 64-bit mode on either big or little endian architectures.