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Relational database schema and tools for bacterial genome annotation
...This software is part of the Ph.D. in Bioinformatics from Anderson Santos (https://orcid.org/0000-0003-3418-0823) developed under the Corynebacterium pseudotuberculosis (Cp) pangenome project. The Cp pangenome delivered to the scientific community fifteen bacterial strains deposited at the GenBank database between the years of 2009 and 2012. The thesis was written in Brazilian Portuguese. However, an English book chapter explaining the software is available at this address: https://doi.org/10.5772/23724. CpDB is the backbone for the Pannotator software: https://pannotator.facom.ufu.br. Both software still is alive and kicking.
Enjoy it.
This is the program and data to accompany both the thesis and paper under the name
A MINE ALTERNATIVE TO D-OPTIMAL DESIGNS FOR THE LINEAR MODEL
This contains the program and summary of the data used for the paper.
This software is developed by Kalidas (http://openwetware.org/wiki/Kalidas_Y) as part of his Ph.D. thesis. The method enables alignment of ligand molecules considered molecular graphs. It is useful in the domain of drug discovery and bioinformatics.
...It makes the search more efficient by using different data like conservation and binding scores about relevant promoter areas.
It is implemented as a part of Barchelor thesis work of Timo Petmanson
available here: http://comserv.cs.ut.ee/forms/ati_report/downloader.php?file=0701eb033c3bad8d3be4a79a29c70107c1cad745
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PocketDepth helps determine binding grooves for protein molecules. Applicable in Bioinformatics and Drug discovery.
Literature - http://www.ncbi.nlm.nih.gov/pubmed/17949996
Author's thesis - http://openwetware.org/wiki/Kalidas_Y
This software system serves as both a DICOM image viewer as well as a diagramming tool for collaborating notes on the given image sets. This my Computer Science graduate thesis project at Loyola Marymount University.