Showing 2 open source projects for "mechanical simulation"

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    xPyder PyMOL Plugin

    Analyze and visualize coupled residues and their networks in proteins

    xPyder is a PyMOL plugin to analyze and visualize on the 3D structure dynamical cross-correlation matrices (DCCM), linear mutual information (LMI), communication propensities (CP), intra- and inter-molecular interactions (e.g. PSN), and more, to produce highly customizable publication-quality images. xPyder identifies networks (using concepts from graph theory, such as hubs and shortest path searching), compares matrices and focuses the analysis on relevant information by filtering the data...
    Downloads: 0 This Week
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    Writing parameter sets for mutant models coded in BlenX is a tedious procedure that involves the mechanical (and error-prone) process of dealing with textual files. GeMPS offers a GUI that simplifies the generation of combined parameter sets.
    Downloads: 0 This Week
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