Showing 2 open source projects for "cpc"

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    CPAT

    RNA coding potential assessment tool

    Using RNA-seq, tens of thousands of novel transcripts and isoforms have been identified (Djebali, et al Nature, 2012 , Carbili et al, Gene & Development, 2011) The discovery of these hidden transcriptome rejuvenate the need of distinguishing coding and noncoding RNA. However, Most previous coding potential prediction methods heavily rely on alignment, either pairwise alignment to search for protein evidence or multiple alignments to calculate phylogenetic conservation score (such as CPC...
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    Downloads: 38 This Week
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    CPC Tools is a collection of open-source proteomics tools for use with mass spectrometry-based proteomics data sets. These tools were created by the Cardiovascular Proteomics Center of Boston University School of Medicine (Boston, MA). STRAP (Software Tool for Rapid Annotation of Proteins) automatically annotates a protein list with information that helps to interpret mass spectrometry data. For more information about STRAP or to download the program, please visit http://www.bumc.bu.edu...
    Downloads: 0 This Week
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