Showing 3 open source projects for "bridge"

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    xPyder PyMOL Plugin

    Analyze and visualize coupled residues and their networks in proteins

    ...PSN), and more, to produce highly customizable publication-quality images. xPyder identifies networks (using concepts from graph theory, such as hubs and shortest path searching), compares matrices and focuses the analysis on relevant information by filtering the data using a modular, user-expandable plugin system that takes advantage of structural and dynamical information, contributing to bridge the gap between dynamical and mechanical properties at the molecular level.
    Downloads: 6 This Week
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  • 2

    VarImpact

    Extracting effects of mutations on molecular properties from text.

    ...The results of thousands of small-scale experiments, on the other hand, are present in the literature and discuss observations made ranging from alteration of active sites to changes in drug response resulting. Our aim is to bridge the gap between detection of genetic variants and their annotation with aforementioned observations. VarImpact extracts experimentally observed changes from the literature. This allows to annotate sequencing results with observed impacts, gather information about the mutational landscape observed in disease populations, and to study disease mechanisms. ...
    Downloads: 0 This Week
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  • 3
    SNPTransformer is a powerful, user-friendly and lightweight program that is designed to bridge upstream genotyping data with downstream genetic programs for genome-wide association studies (GWAS).
    Downloads: 0 This Week
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