Showing 18 open source projects for "aws-cpp-sdk-s3"

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  • 1
    Meraculous-2D

    Meraculous-2D

    Eukaryotic Genome Assembler

    ---------------------------------------- IMPORTANT: Meraculous-2D has been superseded by the HipMer assembler, available here: https://sourceforge.net/projects/hipmer/ ----------------------------------------- Meraculous-2D is a whole genome assembler for NGS reads (Illumina) that is capable of assembling large, diploid genomes with modest computational requirements. Features include: - Efficient k-mer counting and deBruijn graph traversal - Two modes of handling of diploid...
    Downloads: 0 This Week
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  • 2
    CognitionMaster

    CognitionMaster

    object-based image analysis framework

    Wienert S, Heim D, Kotani M, Lindequist B, Stenzinger A, Ishii M, Hufnagl P, Beil M, Dietel M, Denkert C, Klauschen F. CognitionMaster: an object-based image analysis framework. Diagn Pathol 2013, 8:34
    Downloads: 23 This Week
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  • 3
    BarraCUDA Fast Short Read Aligner
    Barracuda is a high-speed sequence aligner based on Sanger's BWA and utilizes the latest Nvidia CUDA architecture for accelerating alignments of sequence reads generated by next-generation sequencers.
    Downloads: 0 This Week
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  • 4
    Cloudomics-for-AWS

    Cloudomics-for-AWS

    AWS resources for Bioinformatics Workflows & Apps

    Library of scripts used for authenticating researchers who submit bioinformatics datasets to an S3 bucket for analytics using AWS resources (Development start : 2015 as part of Cloudomics, formally www.mycloudomics.com)
    Downloads: 0 This Week
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  • 5

    JMGF

    Java implementation for the Mascot Generic File Format (MGF).

    ...It supports reading, writing and parsing of MGF files. Files may be read/ written at once, or stream-based (memory efficient). It's stable, very intuitive and good integrated with Java 1.5 SDK and later.
    Downloads: 0 This Week
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  • 6

    JFASTA

    Java implementation for the FASTA file format.

    ...It supports reading, writing and parsing of single- or multi-FASTA files. Files may be read/ written at once, or stream-based (memory efficient). It's stable, very intuitive and good integrated with Java 1.5 SDK and later.
    Downloads: 0 This Week
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  • 7

    BioUtils - Proteomics

    Lightweight framework for handling biological and bioinformatical data

    The BioUtils - Proteomics package is a lightweight Java framework for handling commonly used data produced and needed in the field of Mass spectrometry in general and especially in the field of Proteomics. It's stable, intuitive to use and good integrated with Java 6 SDK and later.
    Downloads: 0 This Week
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  • 8
    ChIP-RNA-seqPRO

    ChIP-RNA-seqPRO

    ChIP-RNA-sequencing-processing (ChIP-RNA-seqPRO)

    ...A cloud-based resource for comparative analysis of epigenetic, sequence variation, and expression datasets is now available. Please visit the Cloudomics, project for cloud-based resources: https://sourceforge.net/projects/cloudomics-for-aws/
    Downloads: 1 This Week
    Last Update:
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  • 9

    GeneticAlgorithms

    Framework for using the Genetic Algorithms optimization heuristic.

    ...A genetic algorithm mimics the natural processes of evolution, selection and "survival of the fittest". This framework is intuitive and good integrated with Java 1.5 SDK and later.
    Downloads: 0 This Week
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  • 10
    The MeVisLab Community project provides add-on modules that extend the functionality of the MeVisLab software. The modules are provided and maintained by the MeVisLab developer community and can be compiled with the public MeVisLab SDK.
    Downloads: 0 This Week
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  • 11

    Insulin IP Calc

    Insulin infusion protocol calculator

    ...The infusion protocol calculator is based on the updated "Yale Insulin Infusion Protocol" http://bit.ly/1DaVfUd and American Association of Clinical Endocrinologists (AACE) blood sugar targets. http://inpatient.aace.com/ . Source code requires Xamarin Studio & Android SDK to compile.
    Downloads: 1 This Week
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  • 12
    The MAGE-TAB Utilities project provides a simple Perl SDK for parsing, manipulating, visualizing and exporting data in MAGE-TAB format. All file releases are now being made via CPAN.
    Downloads: 0 This Week
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  • 13
    ClearCanvas

    ClearCanvas

    Open source DICOM and RIS/PACS informatics platform

    Open source code base for enabling software innovation in imaging. The extensible and robust platform includes viewing, archiving, management, workflow and distribution of images as well as an open architecture for core competency tool development.
    Downloads: 5 This Week
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  • 14
    birgHPCC

    birgHPCC

    Rapid CUDA Cluster Deployment

    ...In addition to the increase in image size (less than 2 gigabytes) and a new Linux base (previously Debian, now Ubuntu), CUDA-capable bioinformatics software programs, such as NAMD, HOOMD-blue, VMD, GPU-HMMER and GPU-BLAST, are pre-installed in birgHPCC, along with the CUDA driver, libraries and software development kit (SDK). In short, birgHPCC is the world's first CUDA-ready, bioinformatics-based, live DVD.
    Downloads: 0 This Week
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  • 15

    Atlas2Cloud

    Atlas2 Genome Analysis Pipeline on Amazon Web Services

    This is the backend source code of the Atlas2-Cloud pipeline on Amazon which starts and terminates worker nodes, runs analysis and monitors worker instances. It is PRIMARILY meant to be used through Amazon Web Services (AWS) management console by looking for the public Atlas2-Cloud machine image. Alternatively, the code can also be used for running the pipeline from your computer. By installing this software on your computer you will be setting up your computer to act as the head node which would then run the pipeline from your computer.
    Downloads: 0 This Week
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  • 16
    ToxOtis
    ToxOtis is a Java interface to the predictive toxicology services of OpenTox. ToxOtis is being developed to help both those who need a painless way to consume OpenTox web services and for ambitious service providers...
    Downloads: 0 This Week
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  • 17
    The bio-cpp project provides a C/C++ library for bioinformatics.
    Downloads: 0 This Week
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  • 18
    SDK of fingerprint preprocessing, feature extraction and feature matching.
    Downloads: 0 This Week
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