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Please cite: An, J., Lai, J., Lehman, M.L. and Nelson, C.C. (2013) miRDeep*: an integrated application tool for miRNA identification from RNA sequencing data. Nucleic Acids Res, 41, 727-737.
We will create index for you if you tell us your interested species (j.an@qut.edu.au).
download command line version "MDS_command_line_Vxx.zip" clicking "Browse All Files"
please find miRPlant in sourceforge for plant miRNA prediction.
a tool to master DNA sequences, plasmids and restriction digests
The Wiley DNA Editor is a simple tool to handle DNA sequence information up to 100 kbp usingjava script in your browser window. The main idea is to install nothing but start cloning. Here we handle the development and the bug reports. The Wiley DNA Editor can be used from our homepage - or the files available in the download section.
TE-locate is a tool to locate all copies of sequences in a reference sequence
using read-pairs.
TE = Transposable Element
Input is NGS-data.
Please download all files first (including the demo data) and make your first run then.