Showing 172 open source projects for "free linux"

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  • 1
    A virtual software pipeline that contains several PERL modules for processing next generation sequencing data
    Downloads: 0 This Week
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  • 2
    RENCO is a C++ based software for automatic generation of ordinary differential equations for gene and protein expression dynamics in artificial regulatory networks.
    Downloads: 0 This Week
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  • 3
    PepArML: An unsupervised, model-free, combining peptide identification arbiter for tandem mass spectra via machine learning.
    Downloads: 0 This Week
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  • 4
    MutationFinder is a biomedical natural language processing (NLP) system for extracting mentions of point mutations from free text. MutationFinder achieves high performance (99% precision, 81% recall on blind test data) as an information extraction system
    Downloads: 5 This Week
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  • 5
    Discrete Event System Specification (DEVS) combined with System Biology Markup Language (SBML) project: a Java-based tool to solve complex biology processes. Support by RTSync Corporation and Arizona Center for Integrated Modeling & Simulation (ACIMS)
    Downloads: 0 This Week
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  • 6
    An open source, free DIY biotech/biohacking bootstrapping kit. Genetic engineering/therapy, BioBricks, synthetic biology - schematics, tutorials, etc.
    Downloads: 0 This Week
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  • 7
    IGBM (Identification of gene blocks in microorganisms) implements a BLAST-like method to infer conserved gene clusters among closely related prokaryotes, and provides a graphical user interface to navigate the identified clusters and their annotated info
    Downloads: 0 This Week
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  • 8
    The BioArray Software Environment (BASE) v1.2 is a comprehensive free web-based database solution for the massive amounts of data generated by microarray analysis. PrognoChip-BASE extends BASE v1.2.16, providing more functionalities.
    Downloads: 0 This Week
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  • 9
    A tool to calculate distribution of transcription factor pairs across a genome.
    Downloads: 0 This Week
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  • 10
    A project to distributed phylogenies into a MPI Cluster.
    Downloads: 0 This Week
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  • 11
    Phage Therapy Simulation-Discrete Events

    Phage Therapy Simulation-Discrete Events

    Discrete event model simulating bacteria and bacteriophage

    Moved to: http://parkermills.github.io/phagetherapy/
    Downloads: 0 This Week
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  • 12
    FORce based Cluster Editing (FORCE) is a Java software heuristically solving the graph cluster editing problem on weighted edges using BLAST E-values. It further provides a training mode for heuristic parameter estimation.
    Downloads: 0 This Week
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  • 13
    PANDA (Protein And Nucleotide Data Archive) unifies the archival of the sequences from Taxonomy,GenBank,RefSeq,UniProt,PDB,and PRF on a regular interval to build and maintain a Protein and Nucleotide data archive. This project is part of BRC project fund
    Downloads: 0 This Week
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  • 14
    A collection of novel phylogenetics algorithms that assists biologists, geneticists, and bioinformaticians in the analysis and interpretation of phylogenetic data.
    Downloads: 0 This Week
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  • 15
    lcslib is a free library intended for finding longest common substrings in byte strings. It implements structure of suffix tree that is highly optimized for 256-character alphabet. It was originally implemented for finding signatures in TCP dumps.
    Downloads: 0 This Week
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  • 16
    TIRfinder: A tool for mining class II transposons
    Downloads: 0 This Week
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  • 17
    Scripts to implement Hierarchical Annotation-Dependent Alignment (HADA) protocol for sequence alignment, and related functions.
    Downloads: 0 This Week
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  • 18
    Comprehensive Meta Prediction and Annotation Services for Proteins: The new all-in-one prediction tool that can be easily extended to include any SOAP/WSDL-enabled prediction servers. A concise user interface lets you use the results instantly.
    Downloads: 0 This Week
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  • 19
    Genetic programming environment to inference context free grammars base on positive and negative examples of language.
    Downloads: 0 This Week
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  • 20
    VBI Genome Browser - Allows viewing of Genomic Data that adheres to the GUSDB data storage standard.
    Downloads: 0 This Week
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  • 21
    This project provides visual interactive interfaces to custom algorithms used in genomes research.
    Downloads: 0 This Week
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  • 22
    Tools and programs I have written for various purposes and those used in it.
    Downloads: 0 This Week
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  • 23
    formalisation of scientific experiments
    Downloads: 0 This Week
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  • 24
    UMD Overlapper takes a set of reads and quality data and determines which read pairs plausibly overlap; that is, it determines the pairs of reads containing subsequences that are similar enough that they may have come from overlapping parts of the genome.
    Downloads: 0 This Week
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  • 25
    free2bind a suite of general purpose bioinformatics tools for computing the minimum free energy (the most stable) binding between two separate RNA molecules.
    Downloads: 0 This Week
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