Search Results for "python data analysis" - Page 20

PentaPlot: A Software Tool for the Illustration of Genome Mosaicism

TM4 is a suite of applications for managing and analyzing microarray data. TM4 provides data storage and tracking, image analysis, normalization, data filtering, clustering and statistical analysis capabilities. Includes MADAM, Spotfinder, MIDAS, and MeV.

Zherlock has now changed name to SciCraft and no longer hosted on sourceforge. Visit our new site at http://www.scicraft.org

blaSTOR is a Microsoft Access database used to BLAST, store and analyze multiple nucleotide and protein sequences. It has an easy-to-use graphical interface that allows users to perform BLAST operations and organize their data quickly and effectively.

froi (FS-FAST ROI) is a suite of Perl scripts and modules to provide easy slice-, volume-, and surface-based ROI analysis of functional MRI (fMRI) data analyzed by FS-FAST and Freesurfer (http://surfer.nmr.mgh.harvard.edu).

Annotated Gel Markup Language is a simple markup language that is being proposed to markup data obtained by 2D gel electrophorosis.The goal of AGML is to enable proteomics research move into the browsing mode of searching through existing databases.

GeNetDB, contraction of Genetic Network Database, is a bioinformatic platform destined to the study of genetic regulatory networks. It contains in one place the data and the way to study them, providing the user an access to all tools needed for his work

Network Visualization is a mature part of computer science that is enjoying a good deal of growth, partially fueled by Bioinformatics. Network is a synonym for Graph, and both refer to a collection of nodes and edges.

Genetic analysis programs for affected sibling pair data and discrete traits, including multipoint exclusion mapping, map distance estimation, transmission disequilibrium testing, and relationship validation

ai applications,or 'aiapps', is a suite of applications applying algorithms and methods from the domain/field of artificial intelligence, machine learning, evolutionary computation, neural nets etc....to real world problems

ABE is a small, fast and convenient program for visualizing and modeling experimental bioassay data. The data can be modeled using either polynomials or a more specific four-parameter model based upon the standard, sigmoidal dose-response curve.

BASE is a database server to manage (locally) the massive amounts of data generated by microarray analysis. It handles biomaterials, raw data and images, and provides integrated and plug-in-able normalization, data viewing and analysis tools.

ptsa (pronounced pizza) is a Python module for performing time series analysis. Although it is specifically designed with neural data in mind (EEG, MEG, fMRI, etc...), the code should be applicable to almost any type of time series.

MADR is a framework for analysis of series of images (2D data) where each pixel position have the same meaning in every image. Based on a statistical analysis, the images can then be visualised together with parameters from the analysis.

The Open Genome Analysis Platform (OGAP) provides an effectual analysis and visualization toolset for a variety of genome, proteomics, and associated data.

Development codes for hierarchical stochastic block models

The Banane project is a collection of MATLAB routines for processing, analysis and visualization of neurophysiological data, in particular multiple sequences of action potentials, as are commonly recorded with multielectrode arrays.

analytical framework for data analysis

A framework for image analysis and data analysis, aimed towards microscopy and the needs of current research.

Database built using kegg allowing to cross data from different biological analysis technics.

Python module to interface mzML data in Python based on cElementTree with additional tools for MS-informatics. CITATION Please cite us when using pymzML for your publications. Bald, T., Barth, J., Niehues, A., Specht, M., Hippler, M., & Fufezan, C. (2012). pymzML - Python module for high throughput bioinformatics on mass spectrometry data. Bioinformatics, 1-2. doi: 10.1093/bioinformatics/bts066

ProteinArchitect facilitates the visual exploration of the architecture of proteins, including conserved domains, secondary structure elements and structurally flexible regions, e.g. in the context of the analysis of protein superfamilies.

BIRBU (BIological Relationship BUilder) is a Java tool for microarray gene expression data analysis. BIRBU identifies biologically significant relationship between genes using microarray data and prior knowledge on relationships between genes.

SeedSearcher: A Discriminative DNA/RNA motif searching tool. SNAP: A Sequence Analysis Platform

** IMPORTANT NOTICE ** 10 Feb 2006 Code is being moved to the SMI subversion repository (http://smi-protege.stanford.edu/svn/owl/trunk/) Project will continue to be open source. ProtegeOWL info at: http://protege.stanford.edu/overview/protege-owl.html