Showing 918 open source projects for "java-decompiler.jar"

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  • 1
    FastPval is multiple stage p-value computing software that computes empirical p-values from a large set of permutated/resampled background data.
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  • 2
    JHeatChart
    JHeatChart is a simple Java library for generating heat map charts.
    Downloads: 0 This Week
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  • 3
    HeliconiusDB is a project to develop a database schema and web-based software tools for the study of Heliconius butterflies (and other organisms) in evolutionary biology.
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  • 4
    Cloe (Closure Editor) is a graphical, Java based tool used for editing contigs, resolving contig features, and closing both sequencing and physical gaps.
    Downloads: 0 This Week
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  • 5
    SAFEGUI is a graphical interface to the safe R package which performs resampling based categorical significance testing for gene expression data.
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  • 6
    Microarray Gene Expression Database Group and OMG Gene Expression Standard (MAGE)
    Downloads: 2 This Week
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  • 7
    SARSE is a scientific data editor that uses the extendable column format, allows interactive overview, tracks editing history, and has a user extendable tool box.
    Downloads: 0 This Week
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  • 8
    Genevar (GENe Expression VARiation) is a platform of database and web services for the integrative analysis and visulization of SNP-gene assocaitaions in eQTL studies.
    Downloads: 0 This Week
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  • 9
    IDEA (Interactive Display for Evolutionary Analyses) augments PAML with a graphical interface, phylogeny reconstruction using PhyML or PHYLIP, convenient and efficient parallel processing and visualizations.
    Downloads: 0 This Week
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  • 10
    JPS Java Protein Surface
    From a pdb file, the java program calculates the van der Walls surface of the protein in the file.
    Downloads: 0 This Week
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  • 11
    PocketDepth helps determine binding grooves for protein molecules. Applicable in Bioinformatics and Drug discovery. Literature - http://www.ncbi.nlm.nih.gov/pubmed/17949996 Author's thesis - http://openwetware.org/wiki/Kalidas_Y
    Downloads: 0 This Week
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  • 12
    JFlux is a java library and graphical user interface to work with flow cytometry data. In particular, it is adapted to the COPAS biosorter and can analyze expression profiles.
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  • 13
    It's a project to predict peptide fragmentation of mass spectrometry. Check the detail at Anal Chem. 2011 Feb 1;83(3):790-6. On the accuracy and limits of peptide fragmentation spectrum prediction. Li S, Arnold RJ, Tang H, Radivoja
    Downloads: 0 This Week
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  • 14
    A comparative map and trait visualization framework enabling visual integration of genomic data from disparate data sources and allowing rich client-side interactivity and manipulation. Extensible through plugins for new datasources and algorithms.
    Downloads: 0 This Week
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  • 15
    Protein Data Bank transformed into an SQL database with a very powerful search engine and a rich web interface. The engine combines chemical, sequence and 3D structure searches. The interface provides statistics, sequence and 3D structure alignments.
    Downloads: 1 This Week
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  • 16
    A tool to construct the metabolic networks from KEGG, and compare the constructed metabolic networks. Phylogenetic trees can be constructed along the case.
    Downloads: 0 This Week
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  • 17
    A Collection of classes related to biological and bioinformatical topics.
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  • 18
    Graphical editor using HTML5 canvas for input of chemical structures, molecule interactions, as well as protein sequence and 3D structural motifs. Facilitates searches in chemo-informatics, bioinformatics and structural biology .
    Downloads: 0 This Week
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  • 19
    Algorithms for reaction mapping
    Algorithms that optimally & efficiently map atomic reactions. See 1) Atomic Reaction Mapping {Crabtree: amazon, b&n} 2) J. of Exp. Algorithmics, Vol 13 {Crabtree, Mehta} 3) J. Chem. Inf. Model., 2010, 50 (9), pp 1751–1756 {Crabtree, Mehta, Kouri}.
    Downloads: 0 This Week
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  • 20
    An open source MAGE-TAB database and import/export tools to read and write MAGE-TAB formatted data. MOLGENIS is being used to autogenerate it. Import/export tools creation is in progress.
    Downloads: 0 This Week
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  • 21
    BiVeS - Biochemical Model Versioning System BiVeS is a tool based on the XMLDiff algorithm. You can think of it as a kind of SVN for models with biological or chemical background encoded in XML.
    Downloads: 0 This Week
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  • 22
    Basic Electronical Medical Management (BEMM) is an application to control medical data of a set of patients. It is built on top of open source technologies, to provide an integration skeleton of mvn, Datanucleus, Spring, Vaadin, Acceleo technologies.
    Downloads: 0 This Week
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  • 23
    Small set of utilities used by the 2010 iGEM Mexico-UNAM-CINVESTAV Team to automate biobricks from files
    Downloads: 0 This Week
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  • 24
    CNV Workshop is a web-enabled platform for analyzing genome variation such as copy number variation (CNV). Learn about CNV Workshop in our associated BMC Bioinformatics manuscript: http://www.biomedcentral.com/1471-2105/11/74
    Downloads: 4 This Week
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  • 25
    DIVAT (Diagnostic Immunohistochemistry Visualization and Analysis Tool) is designed to graphically analyse comprehensive data sets of immunohistochemical results as those used in clinical diagnostic pathology.
    Downloads: 0 This Week
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