Search Results for "linux terminal for windows7"

MarDRe is a de novo MapReduce-based parallel tool to remove duplicate and near-duplicate DNA reads through the clustering of single-end and paired-end sequences from FASTQ/FASTA datasets (plain or compressed with Gzip/BZip2). This tool allows bioinformaticians to avoid the analysis of not necessary reads, reducing the time of subsequent procedures with the dataset. (e.g., assemblies, mappings, etc.). Among each group of duplicate reads, MarDRe keeps the one with the highest average quality....

HSRA is a MapReduce-based parallel tool for mapping reads from RNA sequencing (RNA-seq) experiments. RNA-seq analyses typically begin by mapping reads to a reference genome in order to determine the location from which the reads were originated, which is a very time-consuming step. This tool allows bioinformatics researchers to efficiently distribute their mapping tasks over the nodes of a cluster by combining a fast multithreaded spliced aligner (HISAT2) with Apache Hadoop, which is a...

This is an offshoot project of open source data quality (osDQ) project https://sourceforge.net/projects/dataquality/ This sub project will create apache spark based data pipeline where JSON based metadata (file) will be used to run data processing , data pipeline , data quality and data preparation and data modeling features for big data. This uses java API of apache spark. It can run in local mode also. Get json example at https://github.com/arrahtech/osdq-spark How to...