Search Results for "linux command"

MarDRe is a de novo MapReduce-based parallel tool to remove duplicate and near-duplicate DNA reads through the clustering of single-end and paired-end sequences from FASTQ/FASTA datasets (plain or compressed with Gzip/BZip2). This tool allows bioinformaticians to avoid the analysis of not necessary reads, reducing the time of subsequent procedures with the dataset. (e.g., assemblies, mappings, etc.). Among each group of duplicate reads, MarDRe keeps the one with the highest average quality....

A framework for learning from a continuous supply of examples, a data stream. Includes classification, regression, clustering, outlier detection and recommender systems. Related to the WEKA project, also written in Java, while scaling to adaptive large scale machine learning.

MyCAT is an Open-Source software, “a large database cluster” oriented to enterprises. MyCAT is an enforced database which is a replacement for MySQL and supports transaction and ACID. Regarded as MySQL cluster of enterprise database, MyCAT can take the place of expensive Oracle cluster. MyCAT is also a new type of database, which seems like a SQL Server integrated with the memory cache technology, NoSQL technology and HDFS big data. And as a new modern enterprise database product, MyCAT is...

HSRA is a MapReduce-based parallel tool for mapping reads from RNA sequencing (RNA-seq) experiments. RNA-seq analyses typically begin by mapping reads to a reference genome in order to determine the location from which the reads were originated, which is a very time-consuming step. This tool allows bioinformatics researchers to efficiently distribute their mapping tasks over the nodes of a cluster by combining a fast multithreaded spliced aligner (HISAT2) with Apache Hadoop, which is a...

The giServer is an easy-to-use integration server for process automation and event-driven or scheduled execution of batch jobs. Instead of using complex XML configuration files an elaborate GUI for batch job management is included. Some possible usage scenarios are: - Automatic processing of incoming data files - Big Data applications - Process automation - Data Mining/Aggregation applications - Automatic Reporting - Processing and analysis of database records