Showing 3 open source projects for "computing"

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    MarDRe

    MapReduce-based tool to remove duplicate DNA reads

    ...Instead, MarDRe takes advantage of the MapReduce programming model to significantly improve ParDRe performance on distributed systems, especially on cloud-based infrastructures. Written in pure Java to maximize cross-platform compatibility, MarDRe is built upon the open-source Apache Hadoop project, the most popular distributed computing framework for Big Data processing.
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  • 2

    HSRA

    Hadoop spliced read aligner for RNA-seq data

    ...This tool allows bioinformatics researchers to efficiently distribute their mapping tasks over the nodes of a cluster by combining a fast multithreaded spliced aligner (HISAT2) with Apache Hadoop, which is a distributed computing framework for scalable Big Data processing. HSRA currently supports single-end and paired-end read alignments from FASTQ/FASTA datasets. Moreover, our tool uses the Hadoop Sequence Parser (HSP) library (link above) to efficiently read the input datasets stored on the Hadoop Distributed File System (HDFS), being able to process datasets compressed with Gzip and BZip2 codecs.
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  • 3
    Cube Platform is a decentralized grid computing system that uses P2P Pastry protocol for communication between nodes. It's a big data storage written in Java.
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