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A Docking Wrapper to Enhance De Novo Molecular Design
DockStream is a docking wrapper providing access to a collection of ligand embedders and docking backends. Docking execution and post hoc analysis can be automated via the benchmarking and analysis workflow. The flexilibity to specifiy a large variety of docking configurations allows tailored protocols for diverse end applications. DockStream can also parallelize docking across CPU cores, increasing throughput. DockStream is integrated with the de novo design platform, REINVENT, allowing one...
Assorted projects. General-purpose libraries for Python, C++, Scala, bash, and others. Meta-programming tools. System utilities. UI components. Web APIs. Configuration files. Benchmarks. Programming competition entries. And much more.
NOTE: Copymark is no longer being developed or supported. It has some flaws that could result in inaccurate data. These flaws have been addressed in copymark2, which you can find on google code: https://code.google.com/p/copymark2/wiki/Copymark2
A simulation of real world file transfer performance. Generates files and then transfers them using the Windows Shell or Finder in OS X. Outputs performance results to .csv and has an optional plotting feature. For documentation, please see the wiki.
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sarface is a user-interface to the sysstat/sar database which inputs data from sar and plots to a live X11 graph via gnuplot. It mimics the cmd-line options from sar but can cross-plot any two or more stats and apply simple mathematical functions them.
Graphical or terminal-based stopwatch with many user-named lap timers. Save / restore timing results via CSV file; timer "runs" even when application isn't running! Supports lap timer label templates. Hildonized (i.e., also runs on Maemo / Nokia 770).
A benchmarking utility providing administration of the benchmarking procedure and a web interface for public access on the results. The goal is to have an automated procedure after the benchmark specification.