Showing 8 open source projects for "informatics"

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  • 1
    Theodore is a tool for semi-automated hybrid assembly of genomes, improving assembly quality by combining multiple information sources.
    Downloads: 0 This Week
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  • 2
    memesa-tools

    memesa-tools

    A collection of tools used in the enumeration of solution spaces

    This collection of tools forms the basis of a pipeline for the complete enumeration of the number of solutions present in a model that maximizes a single objective function.
    Downloads: 0 This Week
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  • 3

    ExonFinder

    A pipeline to extract novel cassette exons/retained-introns

    ExonFinder provides a pipeline to extract novel cassette exons and novel retained-introns from the results of mapping cross-species ESTs against a target genome via blat.
    Downloads: 0 This Week
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  • 4

    NIKS

    NIKS (Needle in a K-stack) - detection of mutations in NGS data

    To get access to the code, please check it out with svn as described in the code section.
    Downloads: 0 This Week
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  • 5
    SOAPsv

    SOAPsv

    SOAPsv: is a program for detecting the structural variation

    This is an approach that complements previous methods for reliable homozygous structural variation identification. Our approach accurately determines genotype and breakpoints relative to a reference genome based on de novo assembly of Illumina Genome Analyzer sequencing data. In this method, we examined only homozygous structural variations because detecting heterozygous structural variations requires assembly of haplotype sequences, which is not yet possible using existing assemblers.
    Downloads: 0 This Week
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  • 6
    SIPeS - Site Identification from Paired-end Sequencing
    Downloads: 0 This Week
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  • 7
    An SQL handler to interface multiple databases data to the OpeNDAP Hyrax (BES) server. Written in C++, it uses unixODBC to query DB and can be dynamically extended to use proprietary ODBC API driver in many easy ways. It is bundled with scripts to ge
    Downloads: 0 This Week
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  • 8
    AQUA is a suite of programs for Analyzing the QUAlity of biomolecular structures that were determined via NMR spectroscopy. AQUA was developed by Ton Rullmann and Jurgen Doreleijers in the NMR Spectroscopy Department, Utrecht.
    Downloads: 0 This Week
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