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I/O performance Analysis Tool2,924 weekly downloads
3store is an RDF "triple store", written in C and backed by MySQL and Berkeley DB. It is an optimisation and port of an older triple store (WebKBC). It provides access to the RDF data via RDQL or SPARQL over HTTP, on the command line or via a C API.
Toolchain for quantification of fluorescence intensity and morphological parameters in single cells using microscope based cytometry.4 weekly downloads
Armadeus is an OpenSource Hardware and Software project based on an ARM core (Freescale i.MX) and Linux. You can consult our wiki at http://www.armadeus.org to join our non profit association or our commercial website at http://www.armadeus.com .38 weekly downloads
DIGS stands for Dependability Infrastructure for Grid Services, and that's what it is. Here you should find tools and techniques to help you to write dependable (fault tolerant) Grid services. For Java only at the moment.
this is a small project which provides several mathematical function useful for a chemist or somebody working with mass specs. The goal is to provide several cuda and c based functions which can be easily accessed using java, groovy and python.
Real-time 3D visualization of space3,242 weekly downloads
webcam based mouse emulator90 weekly downloads
Stochastic simulator for signaling pathways occuring in biological cells. Handles reaction-diffusion processes in 3D tetrahedral meshes.
The source code has been migrated and is now hosted on Github: https://github.com/jenetics/jenetics Jenetics is an Genetic Algorithm, respectively an Evolutionary Algorithm, library written in Java. It is designed with a clear separation of the several concepts of the algorithm, e.g. Gene, Chromosome, Genotype, Phenotype, Population and fitness Function. Jenetics allows you to minimize and maximize the given fitness function without tweaking it. In contrast to other GA implementations, the library uses the concept of an evolution stream (EvolutionStream) for executing the evolution steps. Since the EvolutionStream implements the Java Stream interface, it works smoothly with the rest of the Java Stream API. Other repositories: - https://github.com/jenetics/jenetics Maven: - http://search.maven.org/#search|ga|1|a%3A%22jenetics%2213 weekly downloads
Grinder is a versatile open-source bioinformatic tool to create simulated omic shotgun and amplicon sequence libraries for all main sequencing platforms.15 weekly downloads
BioImageXD - free open source software for analysis, processing and 3D rendering of multi dimensional, multi data channel, time series image data from microscopy and other sources.46 weekly downloads
NASPRO, acronym for "NASPRO Architecture for Sound PROcessing" is a collection of free and open source sound processing software built around the LV2 plugin standard.2 weekly downloads
PHP based web bibliography management system19 weekly downloads
CharGer is a conceptual graph (CG) visual editor written in Java. It is intended for researchers and practitioners who want to create and edit graphs for CG knowledge bases. CharGer supports most CG features, including actors, contexts, and interchange. Graphs can be exported to various image formats.2 weekly downloads
AJT is a set of utility classes for Java for handling some bioinformatics data, graphics file export, GUI widgets, and classes that should long have been added to the official Java API.11 weekly downloads
Olex2 is visualisation software for small-molecule crystallography developed at Durham University/EPSRC. It provides comprehensive tools for crystallographic model manipulation for the end user and an extensible development framework for programmers. The project has been supported by Olexsys Ltd since 2010.
JAGS is Just Another Gibbs Sampler. It is a program for the statistical analysis of Bayesian hierarchical models by Markov Chain Monte Carlo.1,245 weekly downloads
Open-source weather database system for storage of weather/water observations, forecasts, analysis fields, and hindcasts. includes loading program for GRIB files. Visit project website (http://wdb.met.no) for further information. Please note: this project has now moved to http://wdb.met.no
This project is a software oscilloscope for the Universal Software Radio Peripheral. It includes such features as maximum level triggers on any channel, a spectrum analyzer, and more.
PARPs database is a web-based tool whose features include experiment annotation, protein database searching, protein sequence management.Statistical validation, , visualization, and converters from raw MS data open mzXML mzData format
Open architecture for modular and self-independent networked robot.
PARs is a bioinformatics tool for the analysis of cis-regulatory DNA sequences. Composed of two parts: a suite of sequence analysis algorithms for predicting cis-binding sites in DNA sequences and a GUI for visualisation and exploration of the results.
Toolkit for working with and mapping geospatial data607 weekly downloads
The Inverse Ocean Model (IOM) is a software system for developing customized data-assimilation systems for numerical ocean models. It has also been used with general purpose hydrodynamic and geodynamic models.