Electronic Health Record (EHR / EMR)
GaiaEHR(Electronic Health Records) is a Open source Web-Based Software for: Medic Practice management Electronic Medical Records Prescription writing and medical billing application And it can be installed on the following systems: Unix-like systems (Linux, UNIX, and BSD systems) Microsoft systems Mac OS X And other platforms that can run Apache Web server, MySQL We have some other projects here in GaiaEHR.org, some private and other are GPL'd. Demo: http://gaiaehr.org/demo/ user: admin password: pass
Compare gene analysis results from 23andme with the human genome
This program compares personal gene analysis results from 23andme with extracted databases from the human genome project. An typical example of an extracted database is a dataset which contains all alternative alleles which occur less than 1% of the time.
BEDTools is a suite of utilities for comparing genomic features in BED format. These utilities allow one to quickly address tasks such as: 1. Intersecting two BED files. 2. Merge overlapping features. 3. Paired-end overlaps.
GNAT recognizes gene names in text and maps them to NCBI Entrez Gene
GNAT is a BioNLP/text mining tool to recognize and identify gene/protein names in natural language text. It will detect mentions of genes in text, such as PubMed/Medline abstracts, and disambiguate them to remove false positives and map them to the correct entry in the NCBI Entrez Gene database by gene ID. March 2017: We started to upload GNAT output on Medline. See files/results/medline/.
ORFer reads the NCBI GenBank XML sequence format and extracts open reading frames for proteins. Sequences can be requested by GI or accession number. ORFprimer is an extended software package for high throughput PCR primer design for biological sequences
QuickDicom is an easy to use dicom medical imaging package for Mac OSX, providing QuickLook, Spotlight, Quartz Composer, Window/Level and a dicom file analyzer. Also included is the iiDicom Framework for image/dictionary usage in Objective C and Python.
WorldVistA EHR is based on and compatible with the U.S. Department of Veterans Affairs (VA) world renowned EHR, VistA (R). Please refer to the WorldVistA website: http://worldvista.org/Software_Download for download and installation instructions
Reporting, Dashboarding, Analytic, Self-service BI, Ad-hoc reporting
Active Intelligence Server 2 (AIS) is a data visualization tool and fully featured reporting server which enable users from open source community to host any reports created using BIRT, Jasper and Pentaho community edition allowing organization to leverage open source technologies and enable them to use AIS as a reporting server to deploy their existing and new reports seamlessly onto AIS for secure sharing the information in different file formats and schedule to make system automation and much more. AIS comes with self-service BI capabilities enabling end users to make the data-driven decision at the right time, all with minimal IT dependency. Tightly integrated user and role management ensure correct information distribution that prevents unauthorized access to information, collaboration is ever so easy with AIS that people with no BI knowledge can start real-time collaboration in minutes. AIS 2 is also available from the website http://activeintelligence.co.uk/download
Rediscover the Simplicity www.atgclabs.com
Request new Lab Inventory feature or module and receive a free Single User version with new feature. Help us to improve Lab Inventory. We want to hear your feedback! https://www.atgclabs.com/products/li The Lab Inventory System is an innovative, easy to learn solution for research laboratories. You can quickly and easily upload your existing Excel based inventory and get started in minutes, manage laboratory inventory, place orders and keep track of them in one place. Lab Inventory can provide you with the advanced functionality you require enabling you to regain control of your stuff. If you are experiencing problems using the Lab Inventory System then please report your problem to email@example.com If you want to get priority help, need to get up to speed quickly, require some training or need full production support, request customization to your unique work flows or new features, please contact firstname.lastname@example.org Join us on www.linkedin.com/groups/Lab-Inventory
Chemical structures database & machine learning with web services API
AMBIT offers a cheminformatics data management for chemical substances, structures and nanomaterials. Flexible structure, similarity and study queries storage, descriptor calculation and predictive models building via REST web services.User interface for creating read across assessment and generating reports, aligned with regulatory and industrial requirements. Command line applications also available. Integration with third party tools and databases.
Toolboxes for SPM (http://www.fil.ion.ucl.ac.uk/spm/) developed at Freiburg Brain Imaging (http://fbi.uniklinik-freiburg.de/)
The MITRE Identification Scrubber Toolkit (MIST) is a suite of tools for identifying and redacting personally identifiable information (PII) in free-text medical records.
Graphic molecular dynamic package.
Molecular Graphics, Molecular Dynamics, Optimization, Quantum chemistry. Molecular model building. Explicit and implicit water models. http://www.biomolecular-modeling.com/Products.html
SENTENSA Knowledge Miner is a platform independent tool for searching any text. SENTENSA uses robust methods of indexing and searching text, leveraging on experience from more than 20 years of information retrieval.
Encompasing office management healthcare software for medical practices, doctors groups, DMEs, retailers, etc. It does User/patient management, point of sale, scheduling, sign-in, inventory, insurance claims, accouting, etc. Any OS!
Server-client apps that can access DCM4CHEE Dicom images using WADO. The client has an image viewer that is capable of render 2D, 3D and MPR images from DICOM datasets. Based on DCM4CHE and ImageJ. Download Turyon Client and Server (View all files)
Extract PPG signal from video image of the face
The application was designed for the real time contactless photoplethysmography of the human face by means of an ordinary webcam in ambient light environment System requirements: - AMD or Intel CPU with 2 cores and 2.6 GHz clock speed (or higher); - 512 Mb of RAM (or higher); - OS Microsoft Windows 10/8/7/XP, booth 32 and 64 bit versions; - A RGB webcam (Logitech B910 is the best choice).
This project is the implementation of The Virtual Collaborative Environment (VCE) which supports clinical applications of 3D modeling in medicine. The system is based on three layer client-server architecture.
Report Delivery. Report Distribution. Report Bursting. Email & FTP
DocumentBurster is a powerful report delivery software which can break up reports such as invoices, statements, purchase orders, commissions reports or dunning letters in order to distribute relevant parts to each of your clients, subscribers, partners or vendors. DocumentBurster can process PDF and Microsoft Excel reports and will naturally complement and extend your current business intelligence solution. Report bursting software which works with any reporting software including Crystal Reports, Microsoft Access, Microsoft SQL Server Reporting Services, IBM Cognos, Oracle Hyperion and QlikView Easy to integrate report splitting and report distribution capabilities into existing in-house built legacy software or with systems such as SAP ERP, Oracle Applications, Sage, Microsoft Dynamics, PeopleSoft, JD Edwards, MYOB or QuickBooks accounting software.
Gfarm file system is a network shared file system that supports scalable I/O performance in distributed environment. It can federate local disks of network-connected PCs and compute nodes in several clusters.
specific protein interaction networks from transcript expression
Although protein-protein interaction networks are an ubiquitous component of modern systems biology, comparatively few efforts have been made to tailor their topology to the actual cellular condition under study. Since a simple reduction of the networks to the subset of expressed genes only scratches the surface of higher organisms’ regulatory capabilities, we propose the advanced method PPIXpress that allows to exploit expression data at the transcript-level and is thus able to also reveal alterations in protein connectivity caused by alternative splicing. The original publication can be found on https://bioinformatics.oxfordjournals.org/content/32/4/571 .
Coindesigner is a RAD environment to build 3D scenes based in openInventor, just using drag&drop and updating changes on the fly. An external multi platform viewer allows to distribute the scene without need of the RAD.
The Unit Command Climate Assessment and Survey System (UCCASS) is a PHP survey script for creating dynamic surveys. Supports unlimited questions and answers, branching logic, bar graph results with filtering, CSV export, templates, time limits and more..
The project has moved to GitHub: https://github.com/pixmeo/osirix
Electronic Health Records System for ambulatory care
The name was derived from the project name: Portable System for Telehealth and Health Informatics for Rural and Remote Areas. It is an Electronic Health Records Systems for ambulatory care and public health services, and includes Biosurveillance