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Top Apps

  • Use DigitalOcean to Build, Deploy & Scale Web Apps Use DigitalOcean to Build, Deploy & Scale Web Apps Icon
    Use DigitalOcean to Build, Deploy & Scale Web Apps Icon

    The ease and simplicity of DigitalOcean gives developers more time to build and innovate for their customers.

    Thousands of businesses and developers around the world use DigitalOcean to easily deploy, manage, and scale applications of any size with less infrastructure friction. Go from one to a thousand virtual servers in seconds. Also, we continue to add hundreds of in-depth tutorials to our documentation library and have an active online community to get the support you need to succeed.
  • Locate Sensitive Data across Networks and Workstations Locate Sensitive Data across Networks and Workstations Icon
    Locate Sensitive Data across Networks and Workstations Icon

    Build the Business Case for Effective Security Investments

    Your customers recognize the importance of security, but often don’t realize the urgency until they see something tangible. SolarWinds® Risk Intelligence assigns value to your data vulnerability, helping you build a strong business case for data protection and triage the most important problems to tackle. Some powerful features include data risk communicated as financial impact, at-risk data discovery and PCI DSS, PAN & PII scans.
  • GaiaEHR Icon


    Electronic Health Record (EHR / EMR)

    GaiaEHR(Electronic Health Records) is a Open source Web-Based Software for: Medic Practice management Electronic Medical Records Prescription writing and medical billing application And it can be installed on the following systems: Unix-like systems (Linux, UNIX, and BSD systems) Microsoft systems Mac OS X And other platforms that can run Apache Web server, MySQL We have some other projects here in, some private and other are GPL'd. Demo: user: admin password: pass

  • Analyze My Genes Icon

    Analyze My Genes

    Compare gene analysis results from 23andme with the human genome

    This program compares personal gene analysis results from 23andme with extracted databases from the human genome project. An typical example of an extracted database is a dataset which contains all alternative alleles which occur less than 1% of the time.

    Downloads: 26 This Week Last Update: See Project
  • BEDTools

    BEDTools is a suite of utilities for comparing genomic features in BED format. These utilities allow one to quickly address tasks such as: 1. Intersecting two BED files. 2. Merge overlapping features. 3. Paired-end overlaps.

    Downloads: 26 This Week Last Update: See Project
  • GNAT Icon


    GNAT recognizes gene names in text and maps them to NCBI Entrez Gene

    GNAT is a BioNLP/text mining tool to recognize and identify gene/protein names in natural language text. It will detect mentions of genes in text, such as PubMed/Medline abstracts, and disambiguate them to remove false positives and map them to the correct entry in the NCBI Entrez Gene database by gene ID. March 2017: We started to upload GNAT output on Medline. See files/results/medline/.

    Downloads: 26 This Week Last Update: See Project
  • ORFprimer - primer design for ORFs

    ORFer reads the NCBI GenBank XML sequence format and extracts open reading frames for proteins. Sequences can be requested by GI or accession number. ORFprimer is an extended software package for high throughput PCR primer design for biological sequences

    Downloads: 26 This Week Last Update: See Project
  • Find out what (or who) is slowing down your network Find out what (or who) is slowing down your network Icon
    Find out what (or who) is slowing down your network Icon

    Get comprehensive network bandwidth analysis and performance monitoring with SolarWinds® Bandwidth Analyzer Pack.

    Network slow, but you don't know the cause? Use Bandwidth Analyzer Pack (BAP) to monitor and analyze network bandwidth performance and traffic patterns. With BAP, you can identify which users, applications, and protocols are consuming the most bandwidth. You can also monitor Wireless LAN Controller traffic to see what applications and clients are using your wireless network. Try it free for 30 days!
  • Quick Dicom Toolkit

    QuickDicom is an easy to use dicom medical imaging package for Mac OSX, providing QuickLook, Spotlight, Quartz Composer, Window/Level and a dicom file analyzer. Also included is the iiDicom Framework for image/dictionary usage in Objective C and Python.

    Downloads: 26 This Week Last Update: See Project
  • WorldVistA EHR

    WorldVistA EHR is based on and compatible with the U.S. Department of Veterans Affairs (VA) world renowned EHR, VistA (R). Please refer to the WorldVistA website: for download and installation instructions

    Downloads: 26 This Week Last Update: See Project
  • Active Intelligence Server Icon

    Active Intelligence Server

    Reporting, Dashboarding, Analytic, Self-service BI, Ad-hoc reporting

    Active Intelligence Server 2 (AIS) is a data visualization tool and fully featured reporting server which enable users from open source community to host any reports created using BIRT, Jasper and Pentaho community edition allowing organization to leverage open source technologies and enable them to use AIS as a reporting server to deploy their existing and new reports seamlessly onto AIS for secure sharing the information in different file formats and schedule to make system automation and much more. AIS comes with self-service BI capabilities enabling end users to make the data-driven decision at the right time, all with minimal IT dependency. Tightly integrated user and role management ensure correct information distribution that prevents unauthorized access to information, collaboration is ever so easy with AIS that people with no BI knowledge can start real-time collaboration in minutes. AIS 2 is also available from the website

  • Lab Inventory

    Rediscover the Simplicity

    Request new Lab Inventory feature or module and receive a free Single User version with new feature. Help us to improve Lab Inventory. We want to hear your feedback! The Lab Inventory System is an innovative, easy to learn solution for research laboratories. You can quickly and easily upload your existing Excel based inventory and get started in minutes, manage laboratory inventory, place orders and keep track of them in one place. Lab Inventory can provide you with the advanced functionality you require enabling you to regain control of your stuff. If you are experiencing problems using the Lab Inventory System then please report your problem to If you want to get priority help, need to get up to speed quickly, require some training or need full production support, request customization to your unique work flows or new features, please contact Join us on

  • AMBIT:Chemical Structure DB&Web Service  Icon

    AMBIT:Chemical Structure DB&Web Service

    Chemical structures database & machine learning with web services API

    AMBIT offers a cheminformatics data management for chemical substances, structures and nanomaterials. Flexible structure, similarity and study queries storage, descriptor calculation and predictive models building via REST web services.User interface for creating read across assessment and generating reports, aligned with regulatory and industrial requirements. Command line applications also available. Integration with third party tools and databases.

  • Microsoft Office 365 monitoring simplified Microsoft Office 365 monitoring simplified Icon
    Microsoft Office 365 monitoring simplified Icon

    Monitor your Office 365® (O365) Exchange™ mailboxes and system applications with the SolarWinds® Server & Application Monitor unified platform.

    SolarWinds Server & Application Monitor allows you to monitor your hybrid IT applications and systems. Monitor Microsoft® Office 365 Exchange side by side on your on-premises Exchange server and other applications. Check, track, and report on O365 user/shared mailbox growth, users over quota, archived mailboxes, inactive mailboxes, mobile device, mailbox groups, and more. You can also monitor Microsoft portal access to help ensure you’re meeting your SLAs.
  • SPM tools

    Toolboxes for SPM ( developed at Freiburg Brain Imaging (

  • MITRE Identification Scrubber Toolkit

    The MITRE Identification Scrubber Toolkit (MIST) is a suite of tools for identifying and redacting personally identifiable information (PII) in free-text medical records.

    Downloads: 25 This Week Last Update: See Project
  • Ascalaph Designer Icon

    Ascalaph Designer

    Graphic molecular dynamic package.

    Molecular Graphics, Molecular Dynamics, Optimization, Quantum chemistry. Molecular model building. Explicit and implicit water models.

  • Sentensa

    SENTENSA Knowledge Miner is a platform independent tool for searching any text. SENTENSA uses robust methods of indexing and searching text, leveraging on experience from more than 20 years of information retrieval.

    Downloads: 24 This Week Last Update: See Project
  • Office Manager

    Encompasing office management healthcare software for medical practices, doctors groups, DMEs, retailers, etc. It does User/patient management, point of sale, scheduling, sign-in, inventory, insurance claims, accouting, etc. Any OS!

  • DCM4CHEE Java Viewer Lite

    Server-client apps that can access DCM4CHEE Dicom images using WADO. The client has an image viewer that is capable of render 2D, 3D and MPR images from DICOM datasets. Based on DCM4CHE and ImageJ. Download Turyon Client and Server (View all files)

  • Pulse capture Icon

    Pulse capture

    Extract PPG signal from video image of the face

    The application was designed for the real time contactless photoplethysmography of the human face by means of an ordinary webcam in ambient light environment System requirements: - AMD or Intel CPU with 2 cores and 2.6 GHz clock speed (or higher); - 512 Mb of RAM (or higher); - OS Microsoft Windows 10/8/7/XP, booth 32 and 64 bit versions; - A RGB webcam (Logitech B910 is the best choice).

    Downloads: 23 This Week Last Update: See Project
  • Virtual Collaborative Environment

    This project is the implementation of The Virtual Collaborative Environment (VCE) which supports clinical applications of 3D modeling in medicine. The system is based on three layer client-server architecture.

    Downloads: 23 This Week Last Update: See Project
  • DocumentBurster

    Report Delivery. Report Distribution. Report Bursting. Email & FTP

    DocumentBurster is a powerful report delivery software which can break up reports such as invoices, statements, purchase orders, commissions reports or dunning letters in order to distribute relevant parts to each of your clients, subscribers, partners or vendors. DocumentBurster can process PDF and Microsoft Excel reports and will naturally complement and extend your current business intelligence solution. Report bursting software which works with any reporting software including Crystal Reports, Microsoft Access, Microsoft SQL Server Reporting Services, IBM Cognos, Oracle Hyperion and QlikView Easy to integrate report splitting and report distribution capabilities into existing in-house built legacy software or with systems such as SAP ERP, Oracle Applications, Sage, Microsoft Dynamics, PeopleSoft, JD Edwards, MYOB or QuickBooks accounting software.

  • Gfarm File System

    Gfarm file system is a network shared file system that supports scalable I/O performance in distributed environment. It can federate local disks of network-connected PCs and compute nodes in several clusters.

    Downloads: 22 This Week Last Update: See Project
  • PPIXpress Icon


    specific protein interaction networks from transcript expression

    Although protein-protein interaction networks are an ubiquitous component of modern systems biology, comparatively few efforts have been made to tailor their topology to the actual cellular condition under study. Since a simple reduction of the networks to the subset of expressed genes only scratches the surface of higher organisms’ regulatory capabilities, we propose the advanced method PPIXpress that allows to exploit expression data at the transcript-level and is thus able to also reveal alterations in protein connectivity caused by alternative splicing. The original publication can be found on .

    Downloads: 22 This Week Last Update: See Project
  • coindesigner Icon


    Coindesigner is a RAD environment to build 3D scenes based in openInventor, just using drag&drop and updating changes on the fly. An external multi platform viewer allows to distribute the scene without need of the RAD.

    Downloads: 22 This Week Last Update: See Project
  • UCCASS - PHP Survey System

    The Unit Command Climate Assessment and Survey System (UCCASS) is a PHP survey script for creating dynamic surveys. Supports unlimited questions and answers, branching logic, bar graph results with filtering, CSV export, templates, time limits and more..

  • OsiriX - moved to Github Icon

    OsiriX - moved to Github

    DICOM Viewer

    The project has moved to GitHub:

  • THIRRA Electronic Health Records Systems

    Electronic Health Records System for ambulatory care

    The name was derived from the project name: Portable System for Telehealth and Health Informatics for Rural and Remote Areas. It is an Electronic Health Records Systems for ambulatory care and public health services, and includes Biosurveillance

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