Search Results for "simulation tools peptide"
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Showing 36 open source projects for "simulation tools peptide"
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1
CARLA Simulator
Open-source simulator for autonomous driving research.
...Users can configure diverse sensor suites including LIDARs, multiple cameras, depth sensors and GPS among others. Users can easily create their own maps following the OpenDrive standard via tools like RoadRunner. -
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FLEXible
Federated Learning (FL) experiment simulation in Python
FLEXible (Federated Learning Experiments) is a Python framework offering tools to simulate FL with deep learning. It includes built-in datasets (MNIST, CIFAR10, Shakespeare), supports TensorFlow/PyTorch, and has extensions for adversarial attacks, anomaly detection, and decision trees. -
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PageLM
PageLM is a community driven version of NotebookLM
...It is built to help students, educators, and researchers turn documents and topics into more engaging forms of study rather than leaving content in static notes or isolated files. The platform includes a broad set of learning tools such as contextual chat, Cornell-style note generation, flashcards, quizzes, AI podcasts, voice transcription, homework planning, exam simulation, debate practice, and a personalized study companion. It supports uploaded documents including PDF, DOCX, Markdown, and TXT, allowing users to ground questions and generated materials in source content. ... -
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Humanoid-Gym
Reinforcement Learning for Humanoid Robot with Zero-Shot Sim2Real
Humanoid-Gym is a reinforcement learning framework designed to train locomotion and control policies for humanoid robots using high-performance simulation environments. The system is built on top of NVIDIA Isaac Gym, which allows large-scale parallel simulation of robotic environments directly on GPU hardware. Its primary goal is to enable efficient training of humanoid robots in simulation while enabling policies to transfer effectively to real-world hardware without additional training.... -
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VIPER
AI-powered red team platform for adversary simulation toolkit
Viper is a comprehensive red teaming and adversary simulation platform designed to support cybersecurity professionals in conducting advanced security assessments. It integrates a wide range of tools and capabilities required for penetration testing, post-exploitation, and attack simulation workflows into a unified environment. Viper emphasizes ease of use through a graphical interface, allowing users to manage complex operations without relying solely on command-line tools. ... -
6
PentestAgent
AI agent framework for black-box security testing
PentestAgent is an open-source autonomous security testing platform designed to help organizations identify vulnerabilities and assess security posture by simulating real-world attack scenarios without manual intervention. It brings a modular and automated approach to penetration testing by orchestrating a suite of tools and scripts that can emulate common exploitation techniques, reconnaissance workflows, and post-exploitation activities across targets. Users configure rules, policies, and... -
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gstack
Use Garry Tan's exact Claude Code setup: 15 opinionated tools
gstack is an opinionated developer toolkit that encapsulates a complete AI-assisted software development workflow by combining multiple specialized roles into a unified command-driven interface. It is designed to replicate a highly structured engineering environment where tasks such as planning, design review, quality assurance, release management, and documentation are handled through predefined commands and workflows. The system includes a set of curated tools that simulate roles like CEO,... -
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FISSURE
The RF and reverse engineering framework for everyone
FISSURE is an open-source radio frequency analysis and signal intelligence framework built to support software-defined radio research, wireless security experimentation, and protocol reverse engineering. The project brings together tools for capturing, inspecting, decoding, replaying, and analyzing RF signals across a wide range of wireless technologies. It is designed as a practical environment for researchers and operators who need to move from raw spectrum observation to structured investigation without stitching together too many separate utilities by hand. The platform supports workflows related to signal discovery, demodulation, packet inspection, fuzzing, and attack simulation, making it useful for both defensive research and controlled lab testing. ... -
9
TensorFlow Quantum
Open-source Python framework for hybrid quantum-classical ml learning
TensorFlow Quantum is an open-source software framework designed for building and training hybrid quantum-classical machine learning models within the TensorFlow ecosystem. The framework enables researchers and developers to represent quantum circuits as data and integrate them directly into machine learning workflows. By combining classical deep learning techniques with quantum algorithms, the platform allows experimentation with quantum machine learning methods that may offer advantages... -
MongoDB Atlas runs apps anywhereMongoDB Atlas gives you the freedom to build and run modern applications anywhere—across AWS, Azure, and Google Cloud. With global availability in over 115 regions, Atlas lets you deploy close to your users, meet compliance needs, and scale with confidence across any geography.
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10
openctp
Provides CTP stock options and Zhongtai Securities XTP
...Its core idea is to wrap heterogeneous stock and derivatives trading gateways such as Zhongtai XTP, Huaxin Qidian TORA, and others with CTPAPI compatible interfaces, so existing CTP programs can connect simply by swapping dynamic libraries rather than rewriting code. The project offers a comprehensive simulation environment similar to SimNow that supports futures, options, A share stocks, funds, bonds, and stock options, and even extends to Hong Kong and US markets. In addition to the core library, openctp supplies Python bindings for CTPAPI and stock options APIs, making it easier to build strategies, tools, and analytics in Python. It also develops full featured and lightweight trading clients like TickTrader, TickTraderMini, and ViTrader, which support multiple desks and markets. -
11
BioNeMo
BioNeMo Framework: For building and adapting AI models
BioNeMo is an AI-powered framework developed by NVIDIA for protein and molecular generation using deep learning models. It provides researchers and developers with tools to design, analyze, and optimize biological molecules, aiding in drug discovery and synthetic biology applications. -
12
Diffrax
Numerical differential equation solvers in JAX
...This makes it especially appealing for researchers who need equation solvers that can be embedded inside trainable models or simulation-heavy learning systems. -
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Claw3D
Claw3D is an open source 3D engine built on OpenClaw
Claw3D is an experimental open-source platform that combines elements of 3D simulation, developer tooling, and AI orchestration by creating an interactive virtual workspace where AI agents can be visualized as active participants in a shared environment. It is designed as a 3D “virtual office” where users can observe, manage, and interact with multiple AI agents performing tasks such as coding, reviewing pull requests, and coordinating workflows in real time. Instead of relying on... -
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VectorizedMultiAgentSimulator (VMAS)
VMAS is a vectorized differentiable simulator
VectorizedMultiAgentSimulator is a high-performance, vectorized simulator for multi-agent systems, focusing on large-scale agent interactions in shared environments. It is designed for research in multi-agent reinforcement learning, robotics, and autonomous systems where thousands of agents need to be simulated efficiently. -
15
TorchIO
Medical imaging toolkit for deep learning
...It includes multiple intensity and spatial transforms for data augmentation and preprocessing. These transforms include typical computer vision operations such as random affine transformations and also domain-specific ones such as simulation of intensity artifacts due to MRI magnetic field inhomogeneity (bias) or k-space motion artifacts. TorchIO is a Python package containing a set of tools to efficiently read, preprocess, sample, augment, and write 3D medical images in deep learning applications written in PyTorch, including intensity and spatial transforms for data augmentation and preprocessing. ... -
16
RWARE
MuA multi-agent reinforcement learning environment
robotic-warehouse is a simulation environment and framework for robotic warehouse automation, enabling research and development of AI and robotic agents to manage warehouse logistics, such as item picking and transport. -
17
Feynman
The open source AI research agent
Feynman is a command-line AI research agent designed to automate complex research workflows by orchestrating multiple specialized agents that collaborate to gather, analyze, and synthesize information into structured outputs. It operates as a “Claude Code for research,” allowing users to input natural language queries and receive fully developed, source-grounded research briefs, literature reviews, or experimental analyses. The system is built around a multi-agent architecture that includes... -
18
Rust Port
The Rust workspace under rust/ is the current systems-language port
Rust Port is an open-source reconstruction and experimentation framework derived from leaked or reverse-engineered versions of advanced AI coding agents, designed to replicate and extend the capabilities of agentic development systems. It functions as a programmable coding assistant that operates through autonomous workflows, enabling users to generate, modify, and analyze code with minimal manual intervention. The project emphasizes agent-based execution, where tasks are broken down into... -
19
AICGSecEval
A.S.E (AICGSecEval) is a repository-level AI-generated code security
AICGSecEval is an open-source benchmark framework designed to evaluate the security of code generated by artificial intelligence systems. The project was developed to address concerns that AI-assisted programming tools may produce insecure code containing vulnerabilities such as injection flaws or unsafe logic. The framework constructs evaluation tasks based on real-world software repositories and known vulnerability cases derived from CVE records. By simulating realistic development... -
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Meta Agents Research Environments (ARE)
Meta Agents Research Environments is a comprehensive platform
Meta Agents Research Environments (ARE) is a simulation and benchmarking platform. It is designed to evaluate AI agents in dynamic, evolving, multi-step tasks. Unlike static benchmarks, ARE supports environments where agents must adapt to changes over time and reason over sequences of actions. It interacts with applications and faces uncertainty. The included Gaia2 benchmark offers 800 scenarios across multiple “universes”. It can test reasoning, memory, tool use, and adaptability.... -
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SpikingJelly
SpikingJelly is an open-source deep learning framework
SpikingJelly is an open-source deep learning framework for spiking neural networks that is primarily built on top of PyTorch and aimed at neuromorphic computing research. The project provides the components needed to build, train, and evaluate neural models that communicate through discrete spikes rather than the continuous activations used in conventional artificial neural networks. This makes it especially relevant for researchers interested in biologically inspired computing, event-driven... -
22
DriveLM
Driving with Graph Visual Question Answering
DriveLM is a research-oriented framework and dataset designed to explore how vision-language models can be integrated into autonomous driving systems. The project introduces a new paradigm called graph visual question answering that structures reasoning about driving scenes through interconnected tasks such as perception, prediction, planning, and motion control. Instead of treating autonomous driving as a purely sensor-driven pipeline, DriveLM frames it as a reasoning problem where models... -
23
HASH
The best way to use and work with blocks
...HASH is a platform for decision-making, which helps you integrate, understand and use data in a variety of different ways. HASH does this by combining various different powerful tools together into one simple interface. These range from data pipelines and a graph database, through to an all-in-one workspace, no-code tool builder, and agent-based simulation engine. These exist at varying stages of maturity, and while some are polished, not all are ready for real-world production use. You can read more about our big-picture vision at hash.dev -
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Diffusion for World Modeling
Learning agent trained in a diffusion world model
Diffusion for World Modeling is an experimental reinforcement learning system that trains intelligent agents inside a simulated environment generated by a diffusion-based world model. The project introduces the idea of using diffusion models, commonly used for image generation, to simulate the dynamics of an environment and predict future states based on previous observations and actions. Instead of interacting directly with a real environment, the reinforcement learning agent learns within... -
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Automated Interpretability
Code for Language models can explain neurons in language models paper
The automated-interpretability repository implements tools and pipelines for automatically generating, simulating, and scoring explanations of neuron (or latent feature) behavior in neural networks. Instead of relying purely on manual, ad hoc interpretability probing, this repo aims to scale interpretability by using algorithmic methods that produce candidate explanations and assess their quality. It includes a “neuron explainer” component that, given a target neuron or latent feature,...
