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Showing 1 open source project for "trunk"
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Alphafold2
Unofficial Pytorch implementation / replication of Alphafold2
...Deepmind has open sourced the official code in Jax, along with the weights! This repository will now be geared towards a straight pytorch translation with some improvements on positional encoding. lhatsk has reported training a modified trunk of this repository, using the same setup as trRosetta, with competitive results. The underlying assumption is that the trunk works on the residue level, and then constitutes to atomic level for the structure module, whether it be SE3 Transformers, E(n)-Transformer, or EGNN doing the refinement.
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