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Translates Text+Perl to Text. It can be used for any kind of text templating, e.g. code generation. No external modules are required, just a single file. Requires Perl 5.10.1+. PerlPP runs in two passes: it generates a Perl script from your input, and then it runs the generated script. If you see error at (eval ##) (for some number ##), it means there was an error in the generated script. The -D switch defines elements of %D. If you do not specify a value, the value true (a constant in the generated script) will be used. ...

...MANTI was previously (un)known as muda.pl ahead of v3.7, the project was renamed to MANTI.pl with v3.7 on 2019-06-24. It congregates information from different MaxQuant or DiaNN/MSFragger output files into a master file suitable explicitly for protein neo-termini analyses. The central anchor for the data congregation is the modificationSpecificPeptides.txt or diann-output.pr_matrix.tsv file - additional data is inferred from different other source files from the corresponding folder. Maybe also useful for normal proteomics purposes but this script is heavily optimized for protein neo-termini identification and validation. ...

-------- ATTENTION START: RENAMING muda.pl was renamed to MANTI.pl with v3.7, project development can be tracked on the MANTI project page on sourceforge.net. Old versions remain here for archival purposes. -------- ATTENTION END muda.pl is an evaluation script (written in Perl) without great dependencies. It congregates information from 4 different MaxQuant output files into a master file suitable explicitly for protein neo-termini analyses. The central anchor for the data congregation is the modificationSpecificPeptides.txt file - additional data is inferred from different other source files from the MaxQuant txt folder but the starting point for the data assembly is solely the modificationSpecificPeptides.txt file. ...

BCAR is a library for the associative classification, which denotes "Boosting Class Association Rules". BCAR provides a general tool for classification tasks with various types of input data.

A Perl script that renames files of a config-file specified type (ex: mp3) to a user specified naming scheme. The script tries to resolve parts of the file name to specific variables (ex: title). Will prompt for duplicates and keep a log.