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MANTI is a one-stop shop N-termini annotation & evaluation solution. MANTI was previously (un)known as muda.pl ahead of v3.7, the project was renamed to MANTI.pl with v3.7 on 2019-06-24.
It congregates information from different MaxQuant or DiaNN/MSFragger output files into a master file suitable explicitly for protein neo-termini analyses. The central anchor for the data congregation is the modificationSpecificPeptides.txt or diann-output.pr_matrix.tsv file - additional data is inferred...
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muda.pl was renamed to MANTI.pl with v3.7, project development can be tracked on the MANTI project page on sourceforge.net. Old versions remain here for archival purposes.
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muda.pl is an evaluation script (written in Perl) without great dependencies.
It congregates information from 4 different MaxQuant output files into a master file suitable explicitly for protein neo-termini analyses. The central anchor for the data congregation...
UMLS::Query is an umbrella for projects that create measures of semantic similarity for the biomedical domain. Our current project is UMLS-Interface and UMLS-Similarity. Our JBI-2007 article was based on Semantic-Similarity and Snomed-Interface.
CuiTools (Coo-e Tools) is a freely available package of Perl programs for unsupervised and supervised word sense disambiguation experiments. The name CuiTools comes from the Concept Unique Identifiers (CUIs) found in the Unified Medical Language System.
Lascer liefert zu einer Menge binär klassifizierter Attribut-Vektoren eine Menge von Regeln zur Beschreibung der Klassen. Die Regeln können auch mathematische Funktionen enthalten, deren Art vorgegeben werden kann.
Part-of-speech tagging is the task of assigning symbols from a particular set to words in a natural language text. ACOPOST implements and extends well-known machine learning techniques and provides a uniform environment for testing.
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We have implemented a core summarizer of scientific articles written in Spanish, with the following components: a tokenizer, a grammar checker, a clarity checker, a cohesion-coherence checker, a common-topic extractor and an output formatter.
RadicalSpam is a free and open source package distributed under GPL v2, including products such as Postfix, SpamAssassin Amavisd-new, Clamav, Razor, DCC, Postgrey, Bind; providing a secure SMTP relay, ready to use with linux and docker environement. More information : http://www.radical-spam.org
RadicalSpam Virtual Appliance takes full solution of RadicalSpam Community Edition , pre-installed in a OVF virtual machine ( Open Virtual Format ) compatible with the best virtualization platforms on the market , including VMware ESX Server. More information : http://www.radical-spam.org
This project will produce a set of machine measures of text document similarity. A measure of document similarity quantifies the degree to which two text documents are related.
This package consists of Perl modules that implement the semantic relatedness measures of Leacock-Chodorow (1998), Jiang-Conrath (1997), Resnik (1995), Lin (1998), Hirst-St-Onge (1998), Wu & Palmer (1994), Banerjee-Pedersen (2002), and Patwardhan (2003).
The Ngram Statistics Package (ngram) is a suite of Perl programs that identifies significant multi word units (collocations) in written text using many different tests of association. NSP/ngram allows a user to add their own tests with minimal effort
SenseClusters is a suite of Perl programs that clusters similar written contexts using unsupervised methods. It supports its own native methods and Latent Semantic Analysis. It takes users from preprocessing of text to clustered output.
The Thot toolkit repository has moved to http://daormar.github.io/thot/
Thot is a toolkit for statistical machine translation. The new Thot toolkit includes fully automatic and interactive machine translation, incremental training of statistical models, parallel estimation, ...
This project is devoted to the development of natural language processing tools and resources for the Lingala language, which is spoken by tens of millions of people in central Africa.
Fast Artificial Neural Network Library is a free open source neural network library, which implements multilayer artificial neural networks in C with support for both fully connected and sparsely connected networks. Cross-platform execution in both fixed and floating point are supported. It includes a framework for easy handling of training data sets. It is easy to use, versatile, well documented, and fast. Bindings to more than 15 programming languages are available. An easy to read...
Featurama is a library that implements various sequence-labeling algorithms. Currently Michael Collins' averaged perceptron algorithm is fully implemented.
The Moses repository has moved:
https://github.com/moses-smt/mosesdecoder
Factored phrase-based, hierarchical and syntax decoder for statistical machine translation
CAPE stands for Clips And Perl with Extensions. As its name suggests, CAPE is a combined programming environment which allows programs to be written in Clips, a forward-chaining rule-based system which was originally developed
by NASA, and Perl.
This project aims to build a suite of Natural Language Processing tools. Modules will include corpus indexing and access tools, a part-of-speech tagger, tokenisers, text classification software, etc.
This is a Java-based project for complex event extraction from text and co-reference resolution. Currently the code can read BioNLP shared task format (http://2011.bionlp-st.org/) and i2b2 Natural Language Processing for Clinical Data shared task format (https://www.i2b2.org/NLP/DataSets/Main.php). Event extraction includes finding events and the parameters for an event in a text.
The method is based on SVM but other ML algorithms can be adopted. The method details are explained in the...