Showing 4 open source projects for "equilibrium"

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  • 1
    BioEmu

    BioEmu

    Inference code for scalable emulation of protein equilibrium ensembles

    Biomolecular Emulator (BioEmu for short) is a model that samples from the approximated equilibrium distribution of structures for a protein monomer, given its amino acid sequence. By default, unphysical structures (steric clashes or chain discontinuities) will be filtered out, so you will typically get fewer samples in the output than requested. The difference can be very large if your protein has large disordered regions, which are very likely to produce clashes.
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  • 2

    EGO AGI

    An inside-out cognitive engine based on autopoiesis and set theory

    The Environment Generative Operator (EGO) is an AGI engine designed to create individuals capable of autonomous cognitive processes, based on the inside-out perspective of modern neuroscience. Their primary goal is survival – maintaining homeostatic equilibrium over time, which defines the system's operational framework. This approach aligns with autopoiesis, where a self-organizing system's cognitions consist of operations aimed at maintaining its own organization in response to environmental pressures. EGO's operational domain is an object language we call the 'E-language'. Each well-formed formula of the E-language is both a set and a logical statement. ...
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  • 3
    Arena is a computer simulation in which programs compete for CPU time and access to main memory. Processes such as the dynamics of punctuated equilibrium, host-parasite co-evolution and density dependent natural selection are amenable to investigation.
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  • 4
    Content Addressable Memory, Multi-Variate Statistics, Data Mining Includes analyzing datasets, extracting patterns, creating empirical expert system. Computes joint probabilities and implements a "belief" as the solution of an equilibrium equation
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