Showing 136 open source projects for "segmentation"

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  • 1

    Automatic cell lineage reconstruction

    Automatic segmentation and tracking for 3D time-lapse microscopy

    From Amat et al., Nature Methods, 2014*: "The comprehensive reconstruction of cell lineages in complex multicellular organisms is a central goal of developmental biology. We present an open-source computational framework for segmentation and tracking of cell nuclei with high accuracy and speed. We demonstrate its (1) generality, by reconstructing cell lineages in four-dimensional, terabyte-sized image data of fruit-fly, zebrafish and mouse embryos, acquired with three different types of fluorescence microscopes, (2) scalability, by analyzing advanced stages of development with up to 20,000 cells per time point, at 26,000 cells min-1 on a single computer workstation, and (3) ease of use, by adjusting only two parameters across all data sets and providing visualization and editing tools for efficient data curation. ...
    Downloads: 1 This Week
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  • 2

    SURF-nanodots

    Very basic computer vision program

    ...Originated in summer 2007 as a collection of C compiled for Matlab (MEX) files and was eventually ported to a standalone C++ application with a GUI created in Qt. This program takes atomic and magnetic force microscope (AFM/MFM) image pairs as input and uses threshold segmentation to identify magnetic nanodots by intensity in the AFM image. These are then used to assess the magnetic states of those dots in the MFM image Attribution: "C++ GUI Programming with Qt 4" by Blanchette and Summerfield was helpful in getting me started on the GUI.
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  • 3
    Febrl (Freely Extensible Biomedical Record Linkage) does data standardisation (segmentation and cleaning) and probabilistic record linkage ("fuzzy" matching) of one or more files or data sources which do not share a unique record key or identifier.
    Downloads: 2 This Week
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  • 4
    D.U.C.K (Determine segmentation of Unknown words by using Context Knowledge)is an NLP tool, which aims to find the correct segmentation for unknown words in written Hebrew. Statistics from different scopes will be used to determine the segmentation.
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  • 5
    OCR c++ library. Include: contour recognition; vectorisation; matrix letter feature recognition; auto page segmentation and detect rotation; SS3 ASM core; XML base; web-based GUI; 99,6% printed Unicode text recognition; letter base up to 1200 letters.
    Downloads: 0 This Week
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  • 6
    Segfried is an audio feature extraction and segmentation utility
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  • 7
    JVnSegmenter is a Java-based and open-source Vietnamese word segmentation tool. The segmentation model was trained on about 8,000 sentences using Conditional Random Fields (FlexCRFs). This tool would be useful for Vietnamese NLP community.
    Downloads: 1 This Week
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  • 8
    A tool for segmenting objects of interest in images, namely creating masks, and storing them for a set of images. It may provide some automatic/interactive segmentation for certain classes of objects. For computer vision / machine learning applications.
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  • 9
    The Mimas Toolkit is a C++ real-time computer vision library. Algorithms include edge/corner-detection, object recognition/tracking, LSI-filters, segmentation, array-operators, convolution etc. OO wrappers for LAPACK, libxine, V4L, FFTW are provided.
    Downloads: 0 This Week
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  • 10

    Savant

    Python Computer Vision & Video Analytics Framework With Batteries Incl

    Savant is an open-source, high-level framework for building real-time, streaming, highly efficient multimedia AI applications on the Nvidia stack. It helps to develop dynamic, fault-tolerant inference pipelines that utilize the best Nvidia approaches for data center and edge accelerators. Savant is built on DeepStream and provides a high-level abstraction layer for building inference pipelines. It is designed to be easy to use, flexible, and scalable. It is a great choice for building...
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  • 11
    Monk Computer Vision

    Monk Computer Vision

    A low code unified framework for computer vision and deep learning

    ... - Monk Object Detection - https://github.com/Tessellate-Imaging/Monk_Object_Detection. Monk object detection is our take on assembling state of the art object detection, image segmentation, pose estimation algorithms at one place, making them low code and easily configurable on any machine. - Monk GUI - https://github.com/Tessellate-Imaging/Monk_Gui. An interface over these low code tools for non coders.
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