Search Results for "blast"

...The project uses a protocol-constrained approach centered on concepts such as genes, capsules, and events, which are stored as structured assets and selected through signal matching logic. It also depends on Git as part of its operating model, using repository state for rollback, blast-radius calculation, and solidification workflows, which makes it especially relevant for code-centric agent environments. The CLI integrates with external agent runtimes through setup hooks, including support for platforms such as Cursor, where hooks can fire at specific lifecycle moments like session start or after file edits.

MetaErg is a stand-alone and fully automated metagenome and metaproteome annotation pipeline published at: https://www.frontiersin.org/articles/10.3389/fgene.2019.00999/full. If you are using this pipeline for your work, please cite: Dong X and Strous M (2019) An Integrated Pipeline for Annotation and Visualization of Metagenomic Contigs. Front. Genet. 10:999. doi: 10.3389/fgene.2019.00999 The instructions on configuring and running the MetaErg pipeline is available at GitHub...