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...The central anchor for the data congregation is the modificationSpecificPeptides.txt or diann-output.pr_matrix.tsv file - additional data is inferred from different other source files from the corresponding folder. Maybe also useful for normal proteomics purposes but this script is heavily optimized for protein neo-termini identification and validation. A graphical interface is available as Yoğurtlu_MANTI (a Perl/Tk script) + execut. application versions for Win1x without the need to have Perl installed locally.
For a very detailed explanation of script parameters and the evaluation strategy, please consult the extensive manual PDF...
...Maybe also useful for normal proteomics purposes but this script is heavily optimized for protein neo-termini identification and validation.
For a more thorough explanation of script parameters and evaluation strategy, please consult the extensive manual PDF.
pdfsandwich generates "sandwich" OCR pdf files, i.e. pdf files which contain only images (but no editable text) will be processed by optical character recognition (OCR) and the text will be added to each page invisibly "behind" the images.
pdfsandwich is a command line tool which is supposed to be useful to OCR scanned books or journals. It is able to recognize the page layout even for multicolumn text.
EDocIAS (Electronic Document Index And Search) is a PHP-based tool for indexing and searching files of various types. Third-party tools (tesseract, xpdf, etc.) can be configured to support any type of file.