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C++ framework for application of any type of evolutionary computation.
ECF is a framework intended for application of any type of evolutionary computation (GA/GP, DE, Clonalg, ES, PSO, ABC, GAn, local search...). It offers simplicity for the end-user (parameterless usage, tutorial) and customization for experienced EC practicioners.
A package for functional annotation for metagenomes
This package includes a few programs for rapid functional annotation for metagenomic sequences, including,
1) Gene prediction by FragGeneScan;
2) Similarity search by RAPSearch2;
3) Functional annotation in GO (Gene Ontology) and EC (Enzyme Commission) based on similarity search results;
4) From EC to metabolic pathway reconstruction by MinPath.
Inputs: Just sequencing reads (or assemblies)
Outputs: Protein-coding genes (or gene fragments); similarity search; functional annotations (in GO and EC); metabolic pathways.