quadGT is a software package for the joint genotyping of two parents, child’s normal genome and child’s tumor genome based on sequencing reads aligned to a reference genome.
FastAOP is an very high performant AOP (Aspect Oriented Programming) framework for java. The framework was initially
developped to support performance profiling and monitoring for large J2EE applications with nearly no runntime overhad.
Announcement: jp-mobile and fastAOP will go mobile, please visit jp-mobile (GWT based) website at: http://code.google.com/p/jp-mobile/
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Fiona is a tool to automatically analyze the interactional behavior of a given oWFN. It provides two techniques: it checks for the controllability of the given net by computing the interactiong graph and it calculates the operating guideline for the net.
Machine learning toolkit for unsupervised and semi-supervised clustering that demonstrates excellent results on real-world data (see Bekkerman et al. ICML-2005 and ECML-2006).