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...Assume that the graph G and the subgraph Gs have m and n vertices, and km and kn edges respectively, the total worst-case algorithm complexity is O(m^n * n(n-1)/2 * km * log m). This Java implementation implements our ASM algorithm. See README file: https://sourceforge.net/projects/asmalgorithm/files/ If you use our ASM implementation to support academic research, please cite the following paper: Haibin Liu, Lawrence Hunter, Vlado Keselj, and Karin Verspoor. Approximate Subgraph Matching-based Literature Mining for Biomedical Events and Relations. PLOS ONE, 8:4 e60954, 2013.

...We have demonstrated the successful usage of our algorithm in three biomedical relation and event extraction applications: BioNLP 2011 shared tasks on event extraction, Protein-Residue association detection and Protein-Protein interaction identification. This Java implementation implements our ESM algorithm. See README file: https://sourceforge.net/projects/esmalgorithm/files/ If you use our ESM implementation to support academic research, please cite the following paper: Haibin Liu, Vlado Keselj, and Christian Blouin. Exploring a Subgraph Matching Approach for Extracting Biological Events from Literature. Computational Intelligence, 2013.