Search Results for "network graph analysis"

This is a method for identifying graphs using MD5 hashing. It can be used for graph equality comparisons and to facilitate graph isomorphism testing. The graphs can be labeled or unlabeled.

glint is a tool facilitating you in development of state-oriented control entities which supposed to be used in very broad areas of programming (e.g. state-oriented network protocols). glint saves you from pondering how your finite state machine should be organized, how many states it should have and what they should mean. You just tell glint how you would like your control entity to operate and glint returns to you the synthesised magic black box which implements the desired...

The goal of this project is to implement a graph layout / network visualization algorithm as a Java plugin for Cytoscape (http://cytoscape.org/), using a recently published relative entropy optimization based method, called Unified Data Representation (Kovács IA et al. Sci Rep. 2015). If you are using the plugin, please cite: Ágg B, Császár A, Szalay-Bekő M, Veres DV, Mizsei R, Ferdinandy P, Csermely P and Kovács IA (2019) The EntOptLayout Cytoscape plug-in for the efficient visualization of major protein complexes in protein-protein interaction and signalling networks, Bioinformatics 35(21):4490-4492 https://academic.oup.com/bioinformatics/article/35/21/4490/5475596 Our detailed Tutorial on the use of the plugin: https://suopte.com/entopt_2_1_tutorial_20200518.pdf A video about the version 2.1: http://suopte.com/entopt_2_1_tutorial_video.mp4 Don't hesitate to send any questions, comments or bug reports also to agg.bence {at} med.semmelweis-univ.hu.

...From the user's perspective, MDP is a collection of supervised and unsupervised learning algorithms and other data processing units that can be combined into data processing sequences and more complex feed-forward network architectures. From the scientific developer's perspective, MDP is a modular framework, which can easily be expanded. The implementation of new algorithms is easy and intuitive. The new implemented units are then automatically integrated with the rest of the library. The base of available algorithms is steadily increasing and includes signal processing methods (Principal Component Analysis, Independent Component Analysis, Slow Feature Analysis), manifold learning methods ([Hessian] Locally Linear Embedding), several classifiers, probabilistic methods (Factor Analysis, RBM), data pre-processing methods, and many others.

This is a framework used to decompose hierarchical graphs, i.e.,graphs which were created from or contain a hierarchy of modules. Each module is reused several times in the hierarchy. This may be useful to reverse-engineer human constructs like electronic equipment, manufactured machines, or bureaucratic hierarchies; but also to decompose natural constructs like gene-relation or protein-relation nets.

Flamingo is a open-source Big Data Platform that combine a Ajax Rich Web Interface + Workflow Engine + Workflow Designer + MapReduce + Hive Editor + Pig Editor. 1. Easy Tool for big data 2. Use comfortable in Hadoop EcoSystem projects 3. Based GPL V3 License Supporting Pig IDE, Hive IDE, HDFS Browser, Scheduler, Hadoop Job Monitoring, Workflow Engine, Workflow Designer, MapReduce.

BinBase is a software for the automatic analysis of Massspec data from LECO GC-Tofs. All code and documentation has been moved to the google code site of this project: https://code.google.com/p/binbase/ And support is provided by the company coding and more, which can be reached under: contact@codingandmore.org

This application implement an approach for doing keyword based search over semi-structured data available in HTML pages.

LSGTL means LLX’s Static Graph Template Library which is a light-weighted header-only template library developed mainly for static graph analysis. LSGTL is expected to be used in laboratories for research purposes mostly.

A univariate and multivariate analysis UI. This project is no longer under development. Please use as you wish.

LAITOR is a text mining software developed to find co-occurrence of biological entities (gene/protein terms) together with biointeractions and concepts term from customized dictionaries.

This sofware is designed to help different chess clubs to set up their own rating system. It uses USCF approximation formulas for rating calculations. Working example at newarkcc.vfutbole.ru

The Open Optimization for Java provides a framework and the implementation of commonly-used algorithms found in Graph Theory and Network Optimization, e.g. shortest path and postman problem.

Java Framework for automatic transformation of graph structured Process Models (incl. BPMN import) to block structured BPEL code. A graphical tool is provided for visualisation and testing.

The first stage of development is do write a tool to anonymize packet capture files captured with libpcap. After that we will be integrating this with tcpdump to anonymize in real-time and analyze and look for its effect on different IDS's.

callgraph is a project that provides an algorithm for an optimal vertex positioning of any connected graph in 3D, as well as the library and sample application for viewing graphs in 3D.

Design and develop Recommendation and Adaptive Prediction Engines to address eCommerce opportunities. Build a portfolio of engines by creating and porting algorithms from multiple disciplines to a usable form. Try to solve NetFlix and other challenges.

FORce based Cluster Editing (FORCE) is a Java software heuristically solving the graph cluster editing problem on weighted edges using BLAST E-values. It further provides a training mode for heuristic parameter estimation.

An adaptive mini database learns algorithmic operations for data intensive algebraic computational methods within a pervasive computing graph. It also provides generic structures and algorithms as a data fabric.

analysis of a web based social network (initiated by study project)

LogiDist offer a solution of "Computer Aided Logistic" with mostly informative purposes on executed pickups/delivery of merchandise. Is able to manage the whole process of purchase, order management, merchandise delivery to reduce distribution costs.

GraphScript project is a network theory simulator based purely on Java and Java scripting engines. It is intended to allow fast development, testing and visualization of network theory (graph) algorithms.

Software Engineering project. Prototype of a navigation system simulator.