Search Results for "structure"

Protenix is an open-source, trainable PyTorch reimplementation of AlphaFold 3, developed by ByteDance with the goal of democratizing high-accuracy protein structure prediction for computational biology and drug-discovery research. Protenix provides a complete pipeline for turning protein sequences (with optional MSA / sequence alignment) or structural inputs (e.g. PDB/CIF) into full 3D atomic-level structure predictions. It supports both “full” models and lightweight variants such as “Protenix-Mini,” offering a trade-off between speed/compute cost and predictive accuracy — making structure prediction accessible even in resource-constrained environments. ...

ANE Transformers is a reference PyTorch implementation of Transformer components optimized for Apple Neural Engine on devices with A14 or newer and on Macs with M1 or newer chips. It demonstrates how to structure attention and related layers to achieve substantial speedups and lower peak memory compared to baseline implementations when deployed to ANE. The repository targets practitioners who want to keep familiar PyTorch modeling while preparing models for Core ML/ANE execution paths. Documentation highlights reported improvements in throughput and memory residency, while releases track incremental fixes and packaging updates. ...