Showing 9 open source projects for "wes"

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  • 1
    Downloads: 0 This Week
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  • 2
    WES analysis of twenty young women under 35 years old affected by DOR without definite factors damaging ovarian reserve and five women with normal ovarian reserve were performed in this study. As a result, we obtained a set of mutated genes that may be related to DOR, where the missense variant on GPR84 was selected for further study. It is found that GPR84Y370H variant promotes the expression of proinflammatory cytokines (TNF-α, IL-6, IL12B, IL-1β) and chemokines (CCL2, CCL5), as well...
    Downloads: 0 This Week
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  • 3
    Wes Anderson Palettes

    Wes Anderson Palettes

    A Wes Anderson color palette for R

    Tired of generic mass produced palettes for your plots? Short of adding an owl and dressing up your plot in a bowler hat, here’s the most indie thing you can do to one. The first round of palettes derived from the amazing Tumblr blog Wes Anderson Palettes.
    Downloads: 0 This Week
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  • 4

    EXCAVATOR2tool

    Enhanced tool for detecting CNVs from whole-exome sequencing data

    ... (WES) data to identify CNVs. EXCAVATOR2 enhances the identification of all genomic CNVs, both overlapping and non-overlapping targeted exons by integrating the analysis of In-targets and Off- targets reads. EXCAVATOR2 can be effectively employed for the identification of CNVs in small as well as large-scale re-sequencing population and cancer studies. EXCAVATO2 paper: http://nar.oxfordjournals.org/content/early/2016/08/09/nar.gkw695.full?keytype=ref&ijkey=O8r64Qj81gfMzLo
    Downloads: 19 This Week
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  • 5

    Vecuum

    Contamination-induced false variant caller

    NEWS: 02-08-16 A new version of Vecuum 1.0.1 has been uploaded. Kim J et al, "Vecuum: identification and filtration of false somatic variants caused by recombinant vector contamination", Bioinformatics (2016): btw383. http://bioinformatics.oxfordjournals.org/content/early/2016/07/12/bioinformatics.btw383 Vecuum is a Java based variant caller designed for detecting contamination-induced point mutations from hybrid-capture-based genome sequencing data (e.g. WGS, WES, targeted capture, etc...
    Downloads: 0 This Week
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  • 6

    ASGENSENG

    A software to detect allele specific CNV from both WGS and WES data.

    Please go to Files tab and download both the software and the InHouseScripts for data preparation. The tutorial.pptx provides the tutorial of using this software.
    Downloads: 0 This Week
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  • 7

    BALSA

    Integrated WGS and WES secondary analysis

    Visit latest version of BALSA/ELSA at: http://www.l3-bioinfo.com/
    Downloads: 0 This Week
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  • 8

    fastq2vcf

    WES analysis pipeline

    fasq2vcf is a program that generates an analysis pipeline for Whole Exome Sequencing (WES) projects. It takes the raw reads through to variant calling and annotation.
    Downloads: 0 This Week
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  • 9
    The Wiki Editing Suite is a program designed for editing MediaWiki wikis that provides a range of tasks including easy page access, automatic page processing, recent changes monitoring and search page listing.
    Downloads: 0 This Week
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