Search Results for "sequence manipulation suite"
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Showing 53 open source projects for "sequence manipulation suite"
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iText Core/Community
iText for .NET is the .NET version of the iText library
... of the output PDF files will be incorrectly displayed by the GitHub previewer, so be sure to download them to see the correct results. The iText Suite builds on over a decade of lessons learned from iText 5 (and iTextSharp) development. The latest release of iText, version 8, is a simpler, more performant and extensible library that is ready to handle the increased challenges of today's document workflows, one add-on at a time. -
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ImageMagick
ImageMagick 7
ImageMagick® is a free, open-source software suite, used for editing and manipulating digital images. It can be used to create, edit, compose, or convert bitmap images, and supports a wide range of file formats, including JPEG, PNG, GIF, TIFF, and PDF. ImageMagick is widely used in industries such as web development, graphic design, and video editing, as well as in scientific research, medical imaging, and astronomy. Its versatile and customizable nature, along with its robust image processing... -
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RxSwift
Reactive Programming in Swift
... Rx implementation, RxSwift's intention is to enable easy composition of asynchronous operations and streams of data in the form of Observable objects and a suite of methods to transform and compose these pieces of asynchronous work. KVO observation, async operations, UI Events and other streams of data are all unified under abstraction of sequence. This is the reason why Rx is so simple, elegant and powerful. -
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ImageMagick
Display, convert, and edit raster image and vector image files
ImageMagick® is a free and open-source software suite for displaying, converting, and editing raster image and vector image files. It can read and write over 200 image file formats, and can support a wide range of image manipulation operations, such as resizing, cropping, and color correction. ImageMagick is written in C and is available for a wide range of operating systems, including Linux, macOS, and Windows. It can be used as a standalone application, or as a library that can... -
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Bit-Twist (Packet generator/editor)
Packet generator and packet editor for Windows, Linux, BSD, and macOS
Supported systems: Windows, Linux, BSD, and macOS. Bit-Twist is a simple yet powerful libpcap-based Ethernet packet generator and packet editor. It is designed to complement tcpdump, which by itself has done a great job at capturing network traffic. With Bit-Twist, you can now regenerate your captured traffic onto a live network! Packets are generated from tcpdump trace file (.pcap file). Bit-Twist comes with a comprehensive trace file editor to allow you to change the contents of a... -
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NCO netCDF Operators
Command-line operators for netCDF and HDF files
The netCDF Operators, or NCO, are a suite of file operators which facilitate manipulation and analysis of self-describing data stored in the (freely available) netCDF and HDF formats. Volunteers welcome! See homepage for details and download links. -
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OmicsSuite
OmicsSuite: a suite for multi-omics analysis and visualization.
OmicsSuite (https://github.com/OmicsSuite/, https://omicssuite.github.io), original name BioSciTools, a desktop program developed based on Java 11, aims to make new exploration and contribution to the development of bioinformatics, and realize data analysis and visualization in the fields of sequence analysis, multimomics (transcriptomics, genomics, protein omics, metabonomics, single cell), microbiology, clinical, etc. The program inherits the excellent interactive components, perfect analysis... -
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sRNAWorkbench
The UEA sRNA Workbench
A suite of tools for analysing small RNA (sRNA) data from Next Generation Sequencing devices. Including expression profiling of known mirco RNA (miRNA), identification of novel miRNA in deep-sequencing data and identification of other interesting landmarks within high-throughput genetic data -
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Delphi FastStringCaseUtils
A fast, unicode compatible string case manipulation library for Delphi
A fast, unicode compatible string case manipulation library for Delphi containing FastLowerCase() and FastUpperCase() implementations. This code is from jv16 PowerTools Windows Utility Suite https://jv16powertools.com/ -
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List
An immutable list with unmatched performance and functional API
An immutable list with unmatched performance and a comprehensive functional API. List is a purely functional alternative to arrays. It is an implementation of a fast persistent sequence data structure. Compared to JavaScript Array List has three major benefits. List is immutable. This makes it safer and better suited for functional programming. It doesn't tempt you with an imperative API and accidental mutations won't be a source of bugs. Since List doesn't allow mutations it can be heavily... -
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Data Structures for PHP 7
An extension providing efficient data structures for PHP 7
...”. An array gets the job done. Unfortunately, with flexibility comes complexity. Collection is the base interface which covers common functionality like foreach, echo, count, print_r, var_dump, serialize, json_encode, and clone. Sequence describes the behavior of values arranged in a single, linear dimension. Some languages refer to this as a List. Documentation is available on php.net. You should also include the polyfill in your project for IDE integration. -
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Weinberg-CMfinder
Predict and score RNA secondary structures
The CMfinder package is a suite of programs with two main purposes: (1) the cmfinder program infers an alignment and consensus secondary structure of an RNA, using unaligned sequences as input. (2) other tools score alignments to indicate evidence of RNA secondary structure within the alignment. RNAphylo assigns a probabilistic score to an existing alignment, using an explicit phylogenetic model. hmmpair assigns a score based on evidence of covariation that is supported by sequence... -
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The word2vec-interface module provides perl suite of utilities and functions wrapped around 'word2vec'. This includes word2vec word vector data generation and manipulation of word vectors. This perl package depends upon the original word2vec distribution at the site below. https://code.google.com/archive/p/word2vec/
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UAV Drone
Airborne avionics platform for drone system identification and control
UAV Drone is a suite of software and hardware which is hosted on Raspberry Pi for the purpose of drone system identification/mathematical modelling and control law development. This platform measures critical aerospace measurements of Pitch, yaw, Roll via AHRS, location through GPS, and air data through Pitot Static system. Control of the drone is provided through user developed Control law based on critical aircraft parameters to 16 configurable PWM outputs to servos or motors controllers... -
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BPPS-SIPRIS
sequence/structural analysis programs
A suite of statistically-based programs for inferring joint sequence-structural determinants of protein functional specificity written in C/C++ within a linux environment. -
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ngs-suite
A set of NGS tools for DNA-seq and BS-seq
ngs-suite aims is to collect a set of fast and well written C++11 software to handle analysis and manipulation of NGS short reads. It works with DNA-seq and BS-seq data. -
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PDBManip
PDBManip is a free program for editing PDB (Protein Data Bank) Files
PDBManip is a free program for editing and manipulating PDB (Protein Data Bank) files. It has a graphical user interface and it is provided as an executable file for running on Windows® operating systems. There is a bunch of free programs on the internet for the same purpose. What discriminate between PDBManip and those programs is that PDBManip uses AngelScript language which is very similar to C/C++ language, to write scripts to do our editing tasks. I know that the text-manipulation script... -
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Suite of tools for DNA sequence analysis - searching (EST, mRNA, sequencer reads); aligning (ESTs, mRNA, whole genome); and analysis (repeats, kmers).
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REDHORSE
Software suite for the analysis of haploid hybrids using NGS
The alignments to the genome from next-generation-sequencing (NGS) data cannot be directly used as input to the existing recombination detection (RD) algorithms that use multiple sequence alignments (MSA). We therefore designed a software suite called REDHORSE that takes genomic alignments as input, extracts meaningful markers and generates MSAs that are the inputs to existing RD algorithms. In addition, REDHORSE implements a custom RD algorithm that makes use of sequence information... -
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baSeq
A very basic DNA sequence manipulation tool.
Reverse, complement and translate DNA/RNA sequences. Supports all IUPAC ambiguity codes. -
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NUCPOS
Suite for analysis of genome-wide nucleosome positions
NUCPOS is a suite of utilities for the analysis of genome-wide nucleosome positions. The suite is currently composed of 5 programs: nucfrag dyad_bins align_dyads dinucleotide_frequencies hp_fft The analysis starts with the SAM format alignment file generated by an alignment program such as Bowtie2. All utilities are coded in C++ 11, and can easily be modified to use any available genome sequence. -
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QueTAL-effectors
suite to compare TAL effector sequences
The suite QueTAL was developed to offer tailored tools for comparison of TAL effector genes. The program DisTAL considers each repeat as a unit, transforms a TAL effector sequence into a sequence of coded repeats and makes pair-wise alignments between these coded sequences to construct trees. The program FuncTAL is aimed at finding TAL effetors with similar DNA-binding capabilities. It calculates correlations between positional weight matrices obtained from the RVD sequence, and builds trees... -
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Fast Alignment Search Tool suite. A fast sequence read mapper suite for short reads generated with the Illumina platform. Joint development by University of Washington and Simon Fraser University
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cSploit
cSploit - An Android network penetration suite.
cSploit is an Android network analysis and penetration suite which aims to offer to IT security experts/geeks the most complete and advanced professional toolkit to perform network security assesments on a mobile device.Once cSploit is started, you will be able to easily map your network, fingerprint alive hosts operating systems and running services, search for known vulnerabilities, crack logon procedures of many tcp protocols, perform man in the middle attacks such as password sniffing... -
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DNATweezer
A suite of BioPerl wrappers for manipulating DNA and protein sequences
DNATweezer is a suite of Perl scripts for manipulating DNA and proteins sequences. These scripts provide command-line access to the most frequently used BioPerl DNA object methods e.g. reverse-complement and translation of DNA sequences, slicing a sequence alignment, rerooting a phylogenetic tree, and calculating diversity of a population of DNA sequences.